RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 BCAS1O75363 584 aaPredicted RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 IL6P05231 212 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 IDO1P14902 403 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 AGTR1P30556 359 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 RAC3P60763 192 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 KCNJ10P78508 379 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 SELENBP1Q13228 472 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 RNPS1Q15287 305 aaKnown RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 SYPL1Q16563 259 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 DEFB113Q30KQ7 82 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 PDCD4Q53EL6 469 aaKnown RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 TMEM201Q5SNT2 666 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 AGBL2Q5U5Z8 902 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 STAC2Q6ZMT1 411 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 FCRLAQ7L513 359 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 NUFIP2Q7Z417 695 aaKnown RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 MAVSQ7Z434 540 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 STK32CQ86UX6 486 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 TGIF2LYQ8IUE0 185 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 TUSC5Q8IXB3 177 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 ANKFN1Q8N957 763 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 PIWIL2Q8TC59 973 aaKnown RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 RNF128Q8TEB7 428 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 ZFP90Q8TF47 636 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 PIK3IP1Q96FE7 263 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 TRNT1Q96Q11 434 aaKnown RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 ALPK1Q96QP1 1244 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 OR52B2Q96RD2 323 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 TMUB1Q9BVT8 246 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 C12orf49Q9H741 205 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 COQ10BQ9H8M1 238 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 MTHFD2LQ9H903 347 aaPredicted RBP13.44□□□□□ -0.26
LIG1-215ENST00000597901 GP6Q9HCN6 339 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 FANCFQ9NPI8 374 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 SERINC1Q9NRX5 453 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 LIPT1Q9Y234 373 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 SLC35A3Q9Y2D2 325 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 F8P00451 2351 aa13.44□□□□□ -0.26
LIG1-215ENST00000597901 H6PDO95479 791 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 THBDP07204 575 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 YES1P07947 543 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 PPP3CBP16298 524 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 CD53P19397 219 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 SLC7A1P30825 629 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 RYKP34925 604 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 TXNL4AP83876 142 aaKnown RBP13.43□□□□□ -0.26
LIG1-215ENST00000597901 MERTKQ12866 999 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 GSTA3Q16772 222 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 COX20Q5RI15 118 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 PLEKHM3Q6ZWE6 761 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 HMGN2P46Q86SG4 172 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 SLC43A2Q8N370 569 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 FAM71CQ8NEG0 241 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 MARK4Q96L34 752 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 GPR52Q9Y2T5 361 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 HIVEP1P15822 2718 aa13.43□□□□□ -0.26
LIG1-215ENST00000597901 ANKRD17O75179 2603 aaKnown RBP13.43□□□□□ -0.26
LIG1-215ENST00000597901 PRRC2AP48634 2157 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 TEP1Q99973 2627 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 IGHV3-15A0A0B4J1V0 119 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 CLDN24A6NM45 220 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 RFXANKO14593 260 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 UBDO15205 165 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 KLF4O43474 513 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 KRT75O95678 551 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 APOBEC1P41238 236 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 ANXA11P50995 505 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 EPGNQ6UW88 154 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 LRRC74BQ6ZQY2 392 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 TMPPEQ6ZT21 453 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 ZNF563Q8TA94 476 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 PNPT1Q8TCS8 783 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 CNOT9Q92600 299 aaKnown RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 OR5B2Q96R09 309 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 SLC38A1Q9H2H9 487 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 SDR39U1Q9NRG7 319 aaPredicted RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 SLC6A13Q9NSD5 602 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 ZIM2Q9NZV7 527 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 KLHL13Q9P2N7 655 aa13.42□□□□□ -0.26
LIG1-215ENST00000597901 ING1Q9UK53 422 aaPredicted RBP13.42□□□□□ -0.26
LIG1-215ENST00000597901 AGAP5A6NIR3 686 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 CHRM4P08173 479 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 NR2F1P10589 423 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 KLK2P20151 261 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 LOXP28300 417 aaPredicted RBP13.41□□□□□ -0.26
LIG1-215ENST00000597901 ADAM8P78325 824 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 HPCAP84074 193 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 C3orf33Q6P1S2 294 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 ADGRG3Q86Y34 549 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 ARFGAP2Q8N6H7 521 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 PMM1Q92871 262 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 ZNF775Q96BV0 537 aaPredicted RBP13.41□□□□□ -0.26
LIG1-215ENST00000597901 HS3ST6Q96QI5 342 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 CCDC106Q9BWC9 280 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 HDHD5Q9BXW7 423 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 OR10A4Q9H209 315 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 EXOSC3Q9NQT5 275 aaKnown RBP13.41□□□□□ -0.26
LIG1-215ENST00000597901 CTPS2Q9NRF8 586 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 USH1CQ9Y6N9 552 aa13.41□□□□□ -0.26
LIG1-215ENST00000597901 SULT2B1O00204 365 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms