RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PTGDSP41222 190 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 EIF1P41567 113 aaKnown RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 POLR2HP52434 150 aaKnown RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 UGT2B15P54855 530 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 PPP2R2BQ00005 443 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 COX10Q12887 443 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 QPRTQ15274 297 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 PRAMEF20Q5VT98 475 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 BICRALQ6AI39 1079 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 TIGD3Q6B0B8 471 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 OR5M10Q6IEU7 315 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 TBPL2Q6SJ96 375 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 GRINAQ7Z429 371 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 GNPDA2Q8TDQ7 276 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF597Q96LX8 424 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 FAM173AQ9BQD7 235 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 FUZQ9BT04 418 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 SLC19A3Q9BZV2 496 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 ADAM19Q9H013 955 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF552Q9H707 407 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 SMURF2Q9HAU4 748 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 SERINC1Q9NRX5 453 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 KRT84Q9NSB2 600 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 MAN2C1Q9NTJ4 1040 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 SMPD3Q9NY59 655 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 TAS2R10Q9NYW0 307 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 BOKQ9UMX3 212 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 TMEM5Q9Y2B1 443 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 POFUT2Q9Y2G5 429 aa13.89□□□□□ -0.19
TRIM28-209ENST00000597423 KLF13Q9Y2Y9 288 aaPredicted RBP13.89□□□□□ -0.19
TRIM28-209ENST00000597423 A0A087WUJ7 227 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 A0A087WUU8 490 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 KLRC4-KLRK1H3BQV0 150 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 SNPHO15079 494 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 GMFGO60234 142 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 SLC25A12O75746 678 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 CEACAM4O75871 244 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 ADAP00813 363 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 IGFBP5P24593 272 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 FKBP2P26885 142 aaKnown RBP13.88□□□□□ -0.19
TRIM28-209ENST00000597423 APOBEC1P41238 236 aaKnown RBP13.88□□□□□ -0.19
TRIM28-209ENST00000597423 RAPSNQ13702 412 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 WLSQ5T9L3 541 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 SPINK14Q6IE38 97 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 SLC25A25Q6KCM7 469 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 FAHD1Q6P587 224 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 MDGA2Q7Z553 956 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 NKAIN4Q8IVV8 208 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 HS3ST5Q8IZT8 346 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 FADS6Q8N9I5 356 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 AQP11Q8NBQ7 271 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF555Q8NEP9 628 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 FDCSPQ8NFU4 85 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 OR2M3Q8NG83 312 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 OR4K5Q8NGD3 323 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 GATA6Q92908 595 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 C3orf49Q96BT1 292 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 JSRP1Q96MG2 331 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-209ENST00000597423 DCBLD2Q96PD2 775 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 DGCR6LQ9BY27 220 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 PAPOLBQ9NRJ5 636 aaKnown RBP13.88□□□□□ -0.19
TRIM28-209ENST00000597423 PLA2G3Q9NZ20 509 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 LRRC42Q9Y546 428 aa13.88□□□□□ -0.19
TRIM28-209ENST00000597423 MAGED1Q9Y5V3 778 aaPredicted RBP13.88□□□□□ -0.19
TRIM28-209ENST00000597423 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 GNB5O14775 395 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 ADAM11O75078 769 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TRIM3O75382 744 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 NEURL1O76050 574 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 GASTP01350 101 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 SP1P08047 785 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 ADH6P28332 368 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TACR3P29371 465 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 ST13P50502 369 aaKnown RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 DAPP51397 102 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 DSCR4P56555 118 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TMPRSS3P57727 454 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 IL1RL1Q01638 556 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 MERTKQ12866 999 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 LAPTM4AQ15012 233 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 SEC23BQ15437 767 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TAF11Q15544 211 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.87□□□□□ -0.192e-7■□□□□ 10.6
TRIM28-209ENST00000597423 GLYR1Q49A26 553 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 KDM4DQ6B0I6 523 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 C1orf94Q6P1W5 598 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 C5orf46Q6UWT4 87 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 LINC00114Q6XXX2 140 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TSPYL5Q86VY4 417 aaPredicted RBP13.87□□□□□ -0.19
TRIM28-209ENST00000597423 DHRSXQ8N5I4 330 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 WDSUB1Q8N9V3 476 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TMEM178AQ8NBL3 297 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 ZBTB8AQ96BR9 441 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 NTNG2Q96CW9 530 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 C1GALT1C1Q96EU7 318 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 MRGPRX4Q96LA9 322 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 PRSS27Q9BQR3 290 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 TMEM43Q9BTV4 400 aa13.87□□□□□ -0.19
TRIM28-209ENST00000597423 UCK2Q9BZX2 261 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms