RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 H3BNX3 289 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 M0R3H8 397 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 GTPBP1O00178 669 aaKnown RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 FRS3O43559 492 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 CBR3O75828 277 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 KRT36O76013 467 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 IGHG3P01860 377 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 UBTFL6P0CB48 400 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 UBL4AP11441 157 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 TCEA1P23193 301 aaKnown RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 ELAVL4P26378 380 aaKnown RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 MAGEA2P43356 314 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 VLDLRP98155 873 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 NDUFAF6Q330K2 333 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 WIPI1Q5MNZ9 446 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 TRILQ7L0X0 811 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 TSEN54Q7Z6J9 526 aaKnown RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 RBM45Q8IUH3 476 aaKnown RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 FADS6Q8N9I5 356 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 OR2M3Q8NG83 312 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 OR6T1Q8NGN1 323 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 VANGL1Q8TAA9 524 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-207ENST00000597136 ARSGQ96EG1 525 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 AMBRA1Q9C0C7 1298 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 S100A14Q9HCY8 104 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 ARMC1Q9NVT9 282 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 OSGIN2Q9Y236 505 aa13.6□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF264O43296 627 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 ZIC3O60481 467 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 FKBP6O75344 327 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 WISP1O95388 367 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 MT-ND1P03886 318 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 IFNW1P05000 195 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 HPNP05981 417 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 GKN3PP0CG01 181 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 PRG2P13727 222 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF136P52737 540 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 C17orf67Q0P5P2 114 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 SKP2Q13309 424 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 IQCCQ4KMZ1 466 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 AAGABQ6PD74 315 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 CBLN3Q6UW01 205 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 ZDHHC21Q8IVQ6 265 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 MISPQ8IVT2 679 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 GHDCQ8N2G8 530 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 FAM83FQ8NEG4 500 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-207ENST00000597136 SLC35B4Q969S0 331 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF524Q96C55 264 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 SH3YL1Q96HL8 342 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-207ENST00000597136 NPAS1Q99742 590 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 LAT2Q9GZY6 243 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 LDAHQ9H6V9 325 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 EVA1AQ9H8M9 152 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 ACKR4Q9NPB9 350 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 EXOSC3Q9NQT5 275 aaKnown RBP13.59□□□□□ -0.23
TRIM28-207ENST00000597136 SDHAF3Q9NRP4 125 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 NDUFAF4Q9P032 175 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 CARD8Q9Y2G2 431 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 SLC6A5Q9Y345 797 aa13.59□□□□□ -0.23
TRIM28-207ENST00000597136 TRGV5A0A0B4J1U4 118 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 hCG_2039718K7EN88 272 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 HCRTR2O43614 444 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 EIF4E2O60573 245 aaKnown RBP13.58□□□□□ -0.23
TRIM28-207ENST00000597136 ADAM11O75078 769 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 CYP7B1O75881 506 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 FABP3P05413 133 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 RGS8P57771 180 aaPredicted RBP13.58□□□□□ -0.23
TRIM28-207ENST00000597136 HOXC5Q00444 222 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF117Q03924 483 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 NPTX1Q15818 432 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 PIWIL3Q7Z3Z3 882 aaKnown RBP13.58□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF440Q8IYI8 595 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 OR4K17Q8NGC6 315 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 QPCTLQ9NXS2 382 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 SPRR3Q9UBC9 169 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 B4GALT7Q9UBV7 327 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 ZNF835Q9Y2P0 537 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 ENPP4Q9Y6X5 453 aa13.58□□□□□ -0.23
TRIM28-207ENST00000597136 IGLV3-32A0A0A0MS00 114 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 A0A1B0GVC2 190 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 NPIPA2E9PIF3 369 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 NPIPA3F8WFD2 350 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 MGRN1O60291 552 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 TPST2O60704 377 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 SEMA7AO75326 666 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 TIPRLO75663 272 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 DPP4P27487 766 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 ACAA2P42765 397 aaKnown RBP13.58□□□□□ -0.24
TRIM28-207ENST00000597136 SRSF1Q07955 248 aaKnown RBP eCLIP13.58□□□□□ -0.24
TRIM28-207ENST00000597136 ARSKQ6UWY0 536 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 ZNF550Q7Z398 422 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 OR5M1Q8NGP8 315 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 EXO5Q9H790 373 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 YY1AP1Q9H869 796 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 SH3BGRL2Q9UJC5 107 aa13.58□□□□□ -0.24
TRIM28-207ENST00000597136 RPH3AQ9Y2J0 694 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-207ENST00000597136 USP9YO00507 2555 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-207ENST00000597136 FREM1Q5H8C1 2179 aa13.57□□□□□ -0.24
TRIM28-207ENST00000597136 SHISA8B8ZZ34 492 aa13.57□□□□□ -0.24
TRIM28-207ENST00000597136 HNRNPRO43390 633 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms