RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RBM4BQ9BQ04 359 aaKnown RBP13.34□□□□□ -0.27
VRK3-212ENST00000596814 TACO1Q9BSH4 297 aaKnown RBP13.34□□□□□ -0.27
VRK3-212ENST00000596814 RBM4Q9BWF3 364 aaKnown RBP13.34□□□□□ -0.27
VRK3-212ENST00000596814 DSN1Q9H410 356 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 KIF17Q9P2E2 1029 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 FRYQ5TBA9 3013 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 IGF2RP11717 2491 aa13.34□□□□□ -0.27
VRK3-212ENST00000596814 A0A0G2JMM0 328 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 A0A1W2PPB8 328 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 A0A1W2PRS3 328 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 ARRDC5A6NEK1 342 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 KIR3DP1A8MWS1 328 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 C1QTNF9BB2RNN3 333 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 K7ENP7 123 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 CDC40O60508 579 aaKnown RBP eCLIP13.33□□□□□ -0.27
VRK3-212ENST00000596814 C1QTNF9P0C862 333 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 GP1BBP13224 206 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 ZNF26P17031 533 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 PRKACGP22612 351 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 MST1P26927 711 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 SLC1A3P43003 542 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 DNASE1L1P49184 302 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 TMPRSS3P57727 454 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 PPP2R2BQ00005 443 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 DAG1Q14118 895 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 TOMM34Q15785 309 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 INO80CQ6PI98 192 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 UNQ6494/PRO21346Q6UXR6 183 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 IZUMO2Q6UXV1 221 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 ZNF730Q6ZMV8 503 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 WDR88Q6ZMY6 472 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 PLCZ1Q86YW0 608 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 MDS2Q8NDY4 140 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 OR9Q2Q8NGE9 314 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 OR1J4Q8NGS1 313 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 MAGEE2Q8TD90 523 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 TMEM255BQ8WV15 326 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 ACOT11Q8WXI4 607 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 HAS2Q92819 552 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 MPP4Q96JB8 637 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 ZNF597Q96LX8 424 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 JSRP1Q96MG2 331 aaPredicted RBP13.33□□□□□ -0.27
VRK3-212ENST00000596814 PSD2Q9BQI7 771 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 PRSS27Q9BQR3 290 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 OSBPL10Q9BXB5 764 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 FBXL2Q9UKC9 423 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 PRDM4Q9UKN5 801 aa13.33□□□□□ -0.27
VRK3-212ENST00000596814 A0A087WUU8 490 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 MED19A0JLT2 244 aaPredicted RBP13.33□□□□□ -0.28
VRK3-212ENST00000596814 FAM47E-STBD1D6RA91 191 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 OR10H3O60404 316 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 TRIM3O75382 744 aaPredicted RBP13.33□□□□□ -0.28
VRK3-212ENST00000596814 HPRP00739 348 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 CNR1P21554 472 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 ALDH3A2P51648 485 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 ZNF41P51814 821 aaPredicted RBP13.33□□□□□ -0.28
VRK3-212ENST00000596814 AQP4P55087 323 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 GPR85P60893 370 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 KCNAB2Q13303 367 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 IGFL2Q6UWQ7 119 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 LINC00471Q8N535 108 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 ATG16L2Q8NAA4 619 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 OR4K5Q8NGD3 323 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 TMEM234Q8WY98 164 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 ST8SIA1Q92185 356 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 ZNF524Q96C55 264 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 C5orf34Q96MH7 638 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.33□□□□□ -0.28
VRK3-212ENST00000596814 PTGES2Q9H7Z7 377 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 SMURF2Q9HAU4 748 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 C12orf10Q9HB07 376 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 USE1Q9NZ43 259 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 VDAC3Q9Y277 283 aa13.33□□□□□ -0.28
VRK3-212ENST00000596814 NTN1O95631 604 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 ALPLP05186 524 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 PNMTP11086 282 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 CD46P15529 392 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 ANKRD34AQ69YU3 496 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 TIGD3Q6B0B8 471 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 FAHD1Q6P587 224 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 ARSKQ6UWY0 536 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 RRM2BQ7LG56 351 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 GRINAQ7Z429 371 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 ATG4DQ86TL0 474 aaPredicted RBP13.32□□□□□ -0.28
VRK3-212ENST00000596814 AQP11Q8NBQ7 271 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 TMEM239Q8WW34 195 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 C1GALT1C1Q96EU7 318 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 SMAD5Q99717 465 aaKnown RBP13.32□□□□□ -0.28
VRK3-212ENST00000596814 HES7Q9BYE0 225 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 DEPPQ9NTK1 212 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 MED17Q9NVC6 651 aa13.32□□□□□ -0.28
VRK3-212ENST00000596814 KLF13Q9Y2Y9 288 aaPredicted RBP13.32□□□□□ -0.28
VRK3-212ENST00000596814 A0A087WUJ7 227 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 ELOA3DA6NLF2 546 aaPredicted RBP13.31□□□□□ -0.28
VRK3-212ENST00000596814 NME2P1O60361 137 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 SP1P08047 785 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 ANXA8P13928 327 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 PRKCAP17252 672 aa13.31□□□□□ -0.28
VRK3-212ENST00000596814 PTNP21246 168 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms