RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-208	ENST00000595726	ABCG2	Q9UNQ0	655 aa		12.11	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C19orf53	Q9UNZ5	99 aa	Predicted RBP	12.11	□□□□□ -0.47
SHKBP1-208	ENST00000595726	LRP5L	A4QPB2	252 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	TMEM114	B3SHH9	223 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ANGPTL1	O95841	491 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	CSF3	P09919	207 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	PSMA4	P25789	261 aa	Known RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	MAPK1	P28482	360 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	FRK	P42685	505 aa	Predicted RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	PDLIM4	P50479	330 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ABCE1	P61221	599 aa	Known RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	RAC1	P63000	192 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	PSPH	P78330	225 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C17orf67	Q0P5P2	114 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	HSPB3	Q12988	150 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	IQCC	Q4KMZ1	466 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ATP6AP1L	Q52LC2	224 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C6orf136	Q5SQH8	315 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ESPNL	Q6ZVH7	1005 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ZNF551	Q7Z340	670 aa	Predicted RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	SEMA6D	Q8NFY4	1073 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	RNF128	Q8TEB7	428 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	GCDH	Q92947	438 aa	Predicted RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	MTERF3	Q96E29	417 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ELP4	Q96EB1	424 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C1orf50	Q9BV19	199 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	BHLHE41	Q9C0J9	482 aa	Predicted RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C20orf27	Q9GZN8	174 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	KCNK9	Q9NPC2	374 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	FAM120C	Q9NX05	1096 aa	Known RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	KLHL13	Q9P2N7	655 aa		12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	TMEFF2	Q9UIK5	374 aa	Predicted RBP	12.1	□□□□□ -0.47
SHKBP1-208	ENST00000595726	IGLV3-32	A0A0A0MS00	114 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726		A0A1W2PR80	420 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	SCAMP2	O15127	329 aa	Known RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	UTS2	O95399	124 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	BGN	P21810	368 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	SFTPD	P35247	375 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	COMP	P49747	757 aa	Predicted RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	CLK3	P49761	638 aa	Known RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	PTGR1	Q14914	329 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ZNF239	Q16600	458 aa	Known RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726		Q6ZT83	130 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	LILRA2	Q8N149	483 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	FNDC5	Q8NAU1	212 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	ZFP28	Q8NHY6	868 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	POC1B	Q8TC44	478 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	RADIL	Q96JH8	1075 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	SORT1	Q99523	831 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	USB1	Q9BQ65	265 aa	Known RBP	12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	PIMREG	Q9BSJ6	248 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	C1QTNF6	Q9BXI9	259 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	TBL1XR1	Q9BZK7	514 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	SH3BP4	Q9P0V3	963 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	RAP2C	Q9Y3L5	183 aa		12.09	□□□□□ -0.47
SHKBP1-208	ENST00000595726	IGHV3-15	A0A0B4J1V0	119 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GOLGA8Q	A0A0J9YX86	632 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726		A0A1W2PRB8	838 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GOLGA8O	A6NCC3	632 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GOLGA8N	F8WBI6	632 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	SNUPN	O95149	360 aa	Known RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	YES1	P07947	543 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	ZNF17	P17021	662 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	ZNF23	P17027	643 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	IGHV1-2	P23083	117 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	IL2RG	P31785	369 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GPC1	P35052	558 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	HPCAL1	P37235	193 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	SLC1A6	P48664	564 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	CHRNE	Q04844	493 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	RNPS1	Q15287	305 aa	Known RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	PDCD2	Q16342	344 aa	Predicted RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GRAMD1B	Q3KR37	738 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	CYP27C1	Q4G0S4	372 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	TIMM23B	Q5SRD1	257 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	CPTP	Q5TA50	214 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	TMEM108	Q6UXF1	575 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	R3HCC1L	Q7Z5L2	792 aa	Known RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	ANKRD42	Q8N9B4	389 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	GATS	Q8NAP1	163 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	OR52N5	Q8NH56	324 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	TUBGCP3	Q96CW5	907 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	REXO5	Q96IC2	774 aa	Known RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	KLHL15	Q96M94	604 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	LMF2	Q9BU23	707 aa	Known RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	ACSS1	Q9NUB1	689 aa	Predicted RBP	12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	MED17	Q9NVC6	651 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	ATP6V1H	Q9UI12	483 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	METRN	Q9UJH8	293 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	HAO1	Q9UJM8	370 aa		12.08	□□□□□ -0.48
SHKBP1-208	ENST00000595726	TMEM120B	A0PK00	339 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	TMEM89	A2RUT3	159 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	OR5H1	A6NKK0	313 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	SMAD9	O15198	467 aa	Known RBP	12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	EFNA2	O43921	213 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	PRKD3	O94806	890 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	IL33	O95760	270 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	IGKV1D-16	P01601	117 aa		12.07	□□□□□ -0.48
SHKBP1-208	ENST00000595726	PABPC4L	P0CB38	370 aa	Known RBP	12.07	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms