RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SCARB2Q14108 478 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 CYP51A1Q16850 503 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SLC25A35Q3KQZ1 300 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 RNF220Q5VTB9 566 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 REP15Q6BDI9 236 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 NANOGP8Q6NSW7 305 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ZNF836Q6ZNA1 936 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ZNF550Q7Z398 422 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SERPINA11Q86U17 422 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 MTDHQ86UE4 582 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 SNX32Q86XE0 403 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 KRT73Q86Y46 540 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 C10orf111Q8N326 155 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 C9orf106Q8NAJ2 232 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 HIPK4Q8NE63 616 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 KLHL15Q96M94 604 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ZNF607Q96SK3 696 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 CCDC106Q9BWC9 280 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 SPATA9Q9BWV2 254 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 UCK2Q9BZX2 261 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 KAT8Q9H7Z6 458 aaKnown RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 NANOGQ9H9S0 305 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 TIGARQ9NQ88 270 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ARMCX1Q9P291 453 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 ZNF443Q9Y2A4 671 aaPredicted RBP13.52□□□□□ -0.25
UPF1-202ENST00000594243 ZNF175Q9Y473 711 aa13.52□□□□□ -0.25
UPF1-202ENST00000594243 PHF3Q92576 2039 aaKnown RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 CFAP73A6NFT4 308 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 FAM90A27PA6NNH2 459 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 FAAHO00519 579 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 EFNA2O43921 213 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 BCAS1O75363 584 aaPredicted RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 SERPINB7O75635 380 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 TGM6O95932 706 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 IL18BPO95998 194 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 OPN1LWP04000 364 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 TMIGD3P0DMS9 266 aaPredicted RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 COL8A1P27658 744 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 HTR3AP46098 478 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 ZNF136P52737 540 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 DLX5P56178 289 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 CARD18P57730 90 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 MERTKQ12866 999 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 CAPRIN1Q14444 709 aaKnown RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 PON3Q15166 354 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 ADRM1Q16186 407 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 HBMQ6B0K9 141 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 C3orf33Q6P1S2 294 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 PLEKHM3Q6ZWE6 761 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 GRINAQ7Z429 371 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 LIX1LQ8IVB5 337 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 SLC30A8Q8IWU4 369 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 C11orf65Q8NCR3 313 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 NAXEQ8NCW5 288 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 BHLHE22Q8NFJ8 381 aaPredicted RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 OR8J3Q8NGG0 315 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 OR10D3Q8NH80 312 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 OR2V1Q8NHB1 315 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 ZNF524Q96C55 264 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 LRRC46Q96FV0 321 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 ADGRG7Q96K78 797 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 PRRG4Q9BZD6 226 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 TMEM185BQ9H7F4 350 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 RLIMQ9NVW2 624 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 MCTS1Q9ULC4 181 aaKnown RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 ANGPT4Q9Y264 503 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 SPIN1Q9Y657 262 aaPredicted RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 ICE1Q9Y2F5 2266 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 MYO7BQ6PIF6 2116 aa13.51□□□□□ -0.25
UPF1-202ENST00000594243 NCOA6Q14686 2063 aaPredicted RBP13.51□□□□□ -0.25
UPF1-202ENST00000594243 HIVEP3Q5T1R4 2406 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 DNAJC13O75165 2243 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 A0A0J9YW62 118 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 NKX2-6A6NCS4 301 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 PRORSD1PA6NEY8 169 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 TNFSF11O14788 317 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 SYNGR4O95473 234 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 CRHP06850 196 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 FCGR2AP12318 317 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 COX4I1P13073 169 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 IL11P20809 199 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 BMP5P22003 454 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 GRNP28799 593 aaKnown RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 SFTPDP35247 375 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 PLAURQ03405 335 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 EPS8Q12929 822 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 SELPLGQ14242 412 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 CTU2Q2VPK5 515 aaKnown RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 TMEM176BQ3YBM2 270 aaPredicted RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 ATP6V1C2Q8NEY4 427 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 OR10A6Q8NH74 314 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 SLC25A43Q8WUT9 341 aaPredicted RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 FIG4Q92562 907 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 OSTF1Q92882 214 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 SLC35B4Q969S0 331 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 INTS12Q96CB8 462 aaKnown RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 ZNF845Q96IR2 970 aaPredicted RBP13.5□□□□□ -0.25
UPF1-202ENST00000594243 ECSITQ9BQ95 431 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 SFXN3Q9BWM7 321 aa13.5□□□□□ -0.25
UPF1-202ENST00000594243 TRIM8Q9BZR9 551 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms