RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 LACC1Q8IV20 430 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 AQP12AQ8IXF9 295 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 GTPBP8Q8N3Z3 284 aaPredicted RBP12.34□□□□□ -0.43
VMP1-210ENST00000589823 OR4D11Q8NGI4 311 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 NEIL3Q8TAT5 605 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 UTP4Q969X6 686 aaKnown RBP12.34□□□□□ -0.43
VMP1-210ENST00000589823 SLC47A1Q96FL8 570 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 MRGPRX4Q96LA9 322 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 WFDC6Q9BQY6 131 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 STOML1Q9UBI4 398 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 LIPGQ9Y5X9 500 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 ATRXP46100 2492 aa12.34□□□□□ -0.43
VMP1-210ENST00000589823 TCRBV5S2A0A599 114 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 OR2M5A3KFT3 312 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 CPSF4LA6NMK7 179 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 SHISA8B8ZZ34 492 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 ETV2O00321 342 aaPredicted RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 CHMP24386 653 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 IFNA8P32881 189 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 APOBEC1P41238 236 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 POLR2HP52434 150 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 OR1Q1Q15612 314 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 NPTX1Q15818 432 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 ZNF800Q2TB10 664 aaPredicted RBP eCLIP12.33□□□□□ -0.442e-7■■■■■ 32.6
VMP1-210ENST00000589823 FAM98BQ52LJ0 330 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 ENTPD8Q5MY95 495 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 ARHGAP11AQ6P4F7 1023 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 POMZP3Q6PJE2 187 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 CYP4Z1Q86W10 505 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 FAM86B1Q8N7N1 296 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 LSMEM1Q8N8F7 131 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 OR5M1Q8NGP8 315 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 RNF217Q8TC41 542 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 POC1BQ8TC44 478 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 RSRC1Q96IZ7 334 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 SEPHS2Q99611 448 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 BARD1Q99728 777 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 SLX1AQ9BQ83 275 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 PRR14Q9BWN1 585 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 POLR2J2Q9GZM3 115 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 POLR2J3Q9H1A7 115 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 SERINC1Q9NRX5 453 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 SLC6A5Q9Y345 797 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 FAM32AQ9Y421 112 aaKnown RBP12.33□□□□□ -0.44
VMP1-210ENST00000589823 SPTA1P02549 2419 aa12.33□□□□□ -0.44
VMP1-210ENST00000589823 IGSF10Q6WRI0 2623 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 A0A1B0GVC2 190 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 A0A1B0GWA3 101 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 DHRS12A0PJE2 317 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 B8ZZF3 427 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 AQP7O14520 342 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 TPST2O60704 377 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ACTL6AO96019 429 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 PRB1P04280 392 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 FABP3P05413 133 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 UMPSP11172 480 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 EDN3P14138 238 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ITGA2P17301 1181 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 CXCR1P25024 350 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 PSMA4P25789 261 aaKnown RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 HTR2AP28223 471 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ELK4P28324 431 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 TACR3P29371 465 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 TDGF1P3P51864 188 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 GFRA1P56159 465 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 DLX5P56178 289 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 B3GALT5-AS1P59052 145 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 TAS2R41P59536 307 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 FOXK1P85037 733 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 CHRNB3Q05901 458 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 SELENBP1Q13228 472 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 TMEM44Q2T9K0 475 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 SOWAHCQ53LP3 525 aaPredicted RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 ZNF613Q6PF04 617 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ULK3Q6PHR2 472 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 GFRALQ6UXV0 394 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 DNAJA4Q8WW22 397 aaPredicted RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 ABTB1Q969K4 478 aaPredicted RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 C3orf49Q96BT1 292 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 SARAFQ96BY9 339 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ZNF524Q96C55 264 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 NPAS1Q99742 590 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 AMBRA1Q9C0C7 1298 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 ADAM19Q9H013 955 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 MAGIXQ9H6Y5 334 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 CTPS2Q9NRF8 586 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 PLSCR2Q9NRY7 297 aa12.32□□□□□ -0.44
VMP1-210ENST00000589823 SPIN1Q9Y657 262 aaPredicted RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 SPENQ96T58 3664 aaKnown RBP12.32□□□□□ -0.44
VMP1-210ENST00000589823 TMED7-TICAM2A0A0A6YYA0 188 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 A0A1B0GTH9 108 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 TRAPPC13A5PLN9 417 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 H3BML4 177 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 hCG_2039718K7EN88 272 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 RRP9O43818 475 aaKnown RBP12.31□□□□□ -0.44
VMP1-210ENST00000589823 WISP2O76076 250 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 NTN1O95631 604 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 GPIP06744 558 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 PNMTP11086 282 aa12.31□□□□□ -0.44
VMP1-210ENST00000589823 PEPDP12955 493 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms