RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 IL18BPO95998 194 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 TFPTP0C1Z6 253 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 NID1P14543 1247 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 SLC6A8P48029 635 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 LARS2Q15031 903 aaKnown RBP17.5■□□□□ 0.39
SS18-209ENST00000578595 MMEL1Q495T6 779 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 ZNF836Q6ZNA1 936 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 FAM71CQ8NEG0 241 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 BBS10Q8TAM1 723 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 OSTF1Q92882 214 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 RNASE6Q93091 150 aaKnown RBP17.5■□□□□ 0.39
SS18-209ENST00000578595 SPOCK3Q9BQ16 436 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 TRIM8Q9BZR9 551 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 ENKD1Q9H0I2 346 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 ARMC7Q9H6L4 198 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 A4GALTQ9NPC4 353 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 SLC52A3Q9NQ40 469 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 TIGARQ9NQ88 270 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 DNAJB12Q9NXW2 375 aaKnown RBP17.5■□□□□ 0.39
SS18-209ENST00000578595 PACSIN3Q9UKS6 424 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 CLEC4AQ9UMR7 237 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 ZNF232Q9UNY5 417 aa17.5■□□□□ 0.39
SS18-209ENST00000578595 ZNF443Q9Y2A4 671 aaPredicted RBP17.5■□□□□ 0.39
SS18-209ENST00000578595 A0A0G2JPF8 293 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 HNRNPCL2B2RXH8 293 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 HNRNPCL3B7ZW38 293 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 AP3D1O14617 1153 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 HNRNPCL1O60812 293 aaKnown RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 AQP8O94778 261 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 HNRNPCL4P0DMR1 293 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 HOXB9P17482 250 aaPredicted RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 CCNA2P20248 432 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 IDH2P48735 452 aaKnown RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 CTBP2P56545 445 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 CARD18P57730 90 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 MAPK11Q15759 364 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 CYP51A1Q16850 503 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 CTU2Q2VPK5 515 aaKnown RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 DNAJA3Q96EY1 480 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 ADGRG7Q96K78 797 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 OR5B2Q96R09 309 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 RBM24Q9BX46 236 aaKnown RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 FAM107BQ9H098 131 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 EXOSC3Q9NQT5 275 aaKnown RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 ACER3Q9NUN7 267 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 MRGBPQ9NV56 204 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 KLHL14Q9P2G3 628 aa17.49■□□□□ 0.39
SS18-209ENST00000578595 SPIN1Q9Y657 262 aaPredicted RBP17.49■□□□□ 0.39
SS18-209ENST00000578595 A0A1W2PNR3 127 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 PRF1P14222 555 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 RPS4Y1P22090 263 aaKnown RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 MTPNP58546 118 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 EEF1A1P68104 462 aaKnown RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 CAPRIN1Q14444 709 aaKnown RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 MAPRE2Q15555 327 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 SLC25A53Q5H9E4 307 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 ZNF311Q5JNZ3 666 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 EEF1A1P5Q5VTE0 462 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 VWA1Q6PCB0 445 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 PLEKHM3Q6ZWE6 761 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 DMRTC2Q8IXT2 367 aaPredicted RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 ZNF440Q8IYI8 595 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 ROBO4Q8WZ75 1007 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 PMM1Q92871 262 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 CPNE4Q96A23 557 aaPredicted RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 ZNF524Q96C55 264 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 ZNF559Q9BR84 538 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 CPPED1Q9BRF8 314 aaPredicted RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 PIGMQ9H3S5 423 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 CTPS2Q9NRF8 586 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 RLIMQ9NVW2 624 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 FOXD3Q9UJU5 478 aaPredicted RBP17.48■□□□□ 0.39
SS18-209ENST00000578595 EMC9Q9Y3B6 208 aa17.48■□□□□ 0.39
SS18-209ENST00000578595 DSPPQ9NZW4 1301 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CFAP73A6NFT4 308 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 ADAMDEC1O15204 470 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 EFNA2O43921 213 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CRHP06850 196 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 GKN3PP0CG01 181 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 ARAFP10398 606 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 KCNJ5P48544 419 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CDK6Q00534 326 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 KLF10Q13118 480 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 GRINAQ7Z429 371 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 RETREG3Q86VR2 466 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CADM2Q8N3J6 435 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CGREF1Q99674 301 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 SRXN1Q9BYN0 137 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 IKZF5Q9H5V7 419 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 RNF122Q9H9V4 155 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 PROCRQ9UNN8 238 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 IFT52Q9Y366 437 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 CAPN7Q9Y6W3 813 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 FREM1Q5H8C1 2179 aa17.47■□□□□ 0.39
SS18-209ENST00000578595 TRBV5-3A0A0A0MS03 114 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 IGHV3-15A0A0B4J1V0 119 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 TNFSF13O75888 250 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 NTN1O95631 604 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 THBS1P07996 1170 aa17.46■□□□□ 0.39
SS18-209ENST00000578595 PABPC4LP0CB38 370 aaKnown RBP17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms