RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ZNF724A8MTY0 619 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 SHISA9B4DS77 424 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 H6PDO95479 791 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 CD8AP01732 235 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 EDNRAP25101 427 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 IFFO1Q0D2I5 559 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 FAPQ12884 760 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 PPA1Q15181 289 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 ATP6AP1LQ52LC2 224 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 C6orf136Q5SQH8 315 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 C3orf33Q6P1S2 294 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 SSX8Q7RTT4 187 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 DTX2Q86UW9 622 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 RIMKLAQ8IXN7 391 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 TMCO5AQ8N6Q1 288 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 OR5D16Q8NGK9 328 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 APOPT1Q96IL0 206 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 C3orf30Q96M34 536 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 ZNF300Q96RE9 604 aaPredicted RBP18.64■□□□□ 0.57
VPS53-216ENST00000574029 C1orf50Q9BV19 199 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 BHLHE41Q9C0J9 482 aaPredicted RBP18.64■□□□□ 0.57
VPS53-216ENST00000574029 NMUR2Q9GZQ4 415 aa18.64■□□□□ 0.57
VPS53-216ENST00000574029 CISD1Q9NZ45 108 aaKnown RBP18.64■□□□□ 0.57
VPS53-216ENST00000574029 SERINC4A6NH21 518 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 TLX2O43763 284 aaPredicted RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 CD5LO43866 347 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 RAMP1O60894 148 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 NDUFS7O75251 213 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 PGM3O95394 542 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 TP53P04637 393 aaPredicted RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 COX5AP20674 150 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 PRPS1L1P21108 318 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 IGHV1-2P23083 117 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 CCR4P51679 360 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 STK11Q15831 433 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 TIGD2Q4W5G0 525 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 TIMM23BQ5SRD1 257 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 PDZK1Q5T2W1 519 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 IL23RQ5VWK5 629 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 KRTCAP2Q8N6L1 136 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 OR5AK3PQ8NH89 298 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 AGR3Q8TD06 166 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 ST8SIA1Q92185 356 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 ARL8AQ96BM9 186 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 OR5B2Q96R09 309 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 PRPF18Q99633 342 aaKnown RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 THUMPD3Q9BV44 507 aaKnown RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 MECRQ9BV79 373 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 LAT2Q9GZY6 243 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 BARX1Q9HBU1 254 aaPredicted RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 KCNE5Q9UJ90 142 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 GDF2Q9UK05 429 aaPredicted RBP18.63■□□□□ 0.57
VPS53-216ENST00000574029 RTTNQ86VV8 2226 aa18.63■□□□□ 0.57
VPS53-216ENST00000574029 NUP214P35658 2090 aaPredicted RBP18.62■□□□□ 0.57
VPS53-216ENST00000574029 GOLGA8QA0A0J9YX86 632 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 GOLGA8OA6NCC3 632 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 C9JVG2 144 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 GOLGA8NF8WBI6 632 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 ADAM11O75078 769 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 HBA1P69905 142 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 SKP2Q13309 424 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 ZNF141Q15928 474 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 BHLHB9Q6PI77 547 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 P2RY8Q86VZ1 359 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 ZNF775Q96BV0 537 aaPredicted RBP18.62■□□□□ 0.57
VPS53-216ENST00000574029 MUCL1Q96DR8 90 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 QRSL1Q9H0R6 528 aaKnown RBP18.62■□□□□ 0.57
VPS53-216ENST00000574029 SERHL2Q9H4I8 314 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 ALG2Q9H553 416 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 FAIMQ9NVQ4 179 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 NPAP1Q9NZP6 1156 aa18.62■□□□□ 0.57
VPS53-216ENST00000574029 ANK3Q12955 4377 aaKnown RBP18.62■□□□□ 0.57
VPS53-216ENST00000574029 CFLARO15519 480 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 GGT1P19440 569 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 ARRB2P32121 409 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 C21orf58P58505 322 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 TMPPEQ6ZT21 453 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.61■□□□□ 0.57
VPS53-216ENST00000574029 GALNT5Q7Z7M9 940 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 HIPK1Q86Z02 1210 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 FNDC5Q8NAU1 212 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 HS6ST2Q96MM7 605 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 DUSP26Q9BV47 211 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 REPIN1Q9BWE0 567 aaKnown RBP18.61■□□□□ 0.57
VPS53-216ENST00000574029 SLC17A7Q9P2U7 560 aa18.61■□□□□ 0.57
VPS53-216ENST00000574029 CENPVL1A0A0U1RR11 272 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 OR5H1A6NKK0 313 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 DUXAA6NLW8 204 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 ABCD4O14678 606 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 FCMRO60667 390 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 STX11O75558 287 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 UGT2B17O75795 530 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 AK1P00568 194 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 MATN1P21941 496 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 SERPINB5P36952 375 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 DIO1P49895 249 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 CDH11P55287 796 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 SESN3P58005 492 aa18.6■□□□□ 0.57
VPS53-216ENST00000574029 RPS26P62854 115 aaKnown RBP18.6■□□□□ 0.57
VPS53-216ENST00000574029 PDK3Q15120 406 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms