RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 ZSWIM7Q19AV6 140 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CTU2Q2VPK5 515 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 GLYR1Q49A26 553 aaPredicted RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 VASNQ6EMK4 673 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 FAM180AQ6UWF9 173 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CYP2R1Q6VVX0 501 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 LINC00114Q6XXX2 140 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 WDR88Q6ZMY6 472 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 GGNQ86UU5 652 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CARM1Q86X55 608 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ADGRG3Q86Y34 549 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ADGRG5Q8IZF4 528 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 OR4K17Q8NGC6 315 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 NEIL3Q8TAT5 605 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CPT1CQ8TCG5 803 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ST8SIA1Q92185 356 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 SLCO4A1Q96BD0 722 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 C3orf49Q96BT1 292 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ADGRG7Q96K78 797 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 RNF145Q96MT1 663 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 PRSS27Q9BQR3 290 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 SPATA5L1Q9BVQ7 753 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 UGT2B28Q9BY64 529 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 AMBRA1Q9C0C7 1298 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 MAN2C1Q9NTJ4 1040 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ACER3Q9NUN7 267 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 TAS2R10Q9NYW0 307 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 OSGIN1Q9UJX0 560 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ACAD8Q9UKU7 415 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ZNF232Q9UNY5 417 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 VDAC3Q9Y277 283 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ZNF835Q9Y2P0 537 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ZNF337Q9Y3M9 751 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 COL12A1Q99715 3063 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 SPTBN1Q01082 2364 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 FREM1Q5H8C1 2179 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 SPTAN1Q13813 2472 aaKnown RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 IGKV1D-42A0A075B6H8 117 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A0A087WZY1 265 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A0A0B4J2E0 115 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A0A1B0GTH9 108 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A0A1B0GWA3 101 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A0A1B0GX12 115 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 TCRBV3S1A0A5B6 114 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 TTLL8A6PVC2 850 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 AQP7O14520 342 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 SUSD5O60279 629 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 HCN1O60741 890 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 FMO6PO60774 539 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 FZD7O75084 574 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 NPIPB7O75200 414 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZNF708P17019 499 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZNF17P17021 662 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 HK1P19367 917 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 MAGEA2P43356 314 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 IDH2P48735 452 aaKnown RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 STARP49675 285 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 CCR4P51679 360 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 SUCLG1P53597 346 aaKnown RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 CLDN20P56880 219 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 RGS8P57771 180 aaPredicted RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 LSM11P83369 360 aaKnown RBP eCLIP8.38□□□□□ -1.07
VPS35-211ENST00000569950 TLE1Q04724 770 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 EGR4Q05215 589 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 CCNIQ14094 377 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 SLC10A1Q14973 349 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZSCAN26Q16670 478 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 PLEKHM3Q6ZWE6 761 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ADGRE4PQ86SQ3 457 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZNF605Q86T29 641 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ATG4DQ86TL0 474 aaPredicted RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZNF440Q8IYI8 595 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 EID3Q8N140 333 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 TMCO5AQ8N6Q1 288 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 FAM98AQ8NCA5 519 aaKnown RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 BHLHE22Q8NFJ8 381 aaPredicted RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 TNIP2Q8NFZ5 429 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 VANGL1Q8TAA9 524 aaPredicted RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 MRGPRX4Q96LA9 322 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 NSMCE2Q96MF7 247 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 FUZQ9BT04 418 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ZNF426Q9BUY5 554 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 MUC13Q9H3R2 512 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 COQ10BQ9H8M1 238 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 NDUFAF4Q9P032 175 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 A4GNTQ9UNA3 340 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 RPH3AQ9Y2J0 694 aaPredicted RBP8.38□□□□□ -1.07
VPS35-211ENST00000569950 SH3GLB1Q9Y371 365 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 ADGRG4Q8IZF6 3080 aa8.38□□□□□ -1.07
VPS35-211ENST00000569950 TRGV5A0A0B4J1U4 118 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ZC3H12DA2A288 527 aaKnown RBP8.37□□□□□ -1.07
VPS35-211ENST00000569950 J3KTA2 159 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ACOT7O00154 380 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 GSTA4O15217 222 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 TRAPPC6AO75865 159 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 CYP7B1O75881 506 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 ZNF682O95780 498 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 EDN3P14138 238 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 PGCP20142 388 aa8.37□□□□□ -1.07
VPS35-211ENST00000569950 KLK2P20151 261 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms