RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 GID8Q9NWU2 228 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 DNAJB12Q9NXW2 375 aaKnown RBP11.7□□□□□ -0.54
CLK3-224ENST00000568605 PRDM4Q9UKN5 801 aa11.7□□□□□ -0.54
CLK3-224ENST00000568605 CDHR4A6H8M9 788 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 GMNCA6NCL1 334 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 CFAP73A6NFT4 308 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ETV2O00321 342 aaPredicted RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 FAAHO00519 579 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 HNRNPRO43390 633 aaKnown RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 SERPINB7O75635 380 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 RCBTB2O95199 551 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SYNGR4O95473 234 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 CRHP06850 196 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 NUDT7P0C024 238 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 PABPC4LP0CB38 370 aaKnown RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 CTSSP25774 331 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 RYKP34925 604 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SFTPDP35247 375 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 PEX19P40855 299 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ASCL1P50553 236 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SUCLG1P53597 346 aaKnown RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 CLDN15P56746 228 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SESN3P58005 492 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 MTPNP58546 118 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 COPZ1P61923 177 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 RBBP4Q09028 425 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 MERTKQ12866 999 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 PON3Q15166 354 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 MAPK11Q15759 364 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ZNF311Q5JNZ3 666 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 INTS11Q5TA45 600 aaKnown RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 HBMQ6B0K9 141 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SEM1Q6ZVN7 128 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ZNF550Q7Z398 422 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 C9orf106Q8NAJ2 232 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 NAXEQ8NCW5 288 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 HIPK4Q8NE63 616 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 OR10D3Q8NH80 312 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 OR2V1Q8NHB1 315 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 NFKBIDQ8NI38 313 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 POC1BQ8TC44 478 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 MAL2Q969L2 176 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SLC35B4Q969S0 331 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 CPNE4Q96A23 557 aaPredicted RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 ZG16BQ96DA0 208 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ELAC2Q9BQ52 826 aaKnown RBP11.69□□□□□ -0.54
CLK3-224ENST00000568605 IKZF5Q9H5V7 419 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SLC24A3Q9HC58 644 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 ACER3Q9NUN7 267 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 SLC13A4Q9UKG4 626 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 CACNA1DQ01668 2161 aa11.69□□□□□ -0.54
CLK3-224ENST00000568605 NKX2-6A6NCS4 301 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 PRORSD1PA6NEY8 169 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 CLDN24A6NM45 220 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 KDM4EB2RXH2 506 aaPredicted RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 TNFSF11O14788 317 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 ADAMDEC1O15204 470 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 TOXO94900 526 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 PGM3O95394 542 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 NTN1O95631 604 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 COX6B1P14854 86 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 FKBP2P26885 142 aaKnown RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 APOBEC1P41238 236 aaKnown RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 ZNF136P52737 540 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 SEC24CP53992 1094 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 NCALDP61601 193 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 TOMM34Q15785 309 aaPredicted RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 PLEKHM3Q6ZWE6 761 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 ARPINQ7Z6K5 226 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 SERPINA11Q86U17 422 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 VRK2Q86Y07 508 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 OR8J3Q8NGG0 315 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 RP9Q8TA86 221 aaKnown RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 CNOT9Q92600 299 aaKnown RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 INTS12Q96CB8 462 aaKnown RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 PIGMQ9H3S5 423 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 EVA1AQ9H8M9 152 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 KLHL28Q9NXS3 571 aa11.68□□□□□ -0.54
CLK3-224ENST00000568605 FOXD3Q9UJU5 478 aaPredicted RBP11.68□□□□□ -0.54
CLK3-224ENST00000568605 ANKHD1Q8IWZ3 2542 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 EEF1E1-BLOC1S5C9J1V9 151 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 FBP2O00757 339 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 EEF1E1O43324 174 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 SNX3O60493 162 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 PLGP00747 810 aaPredicted RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 PRKAR1BP31321 381 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 IDH2P48735 452 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 POLR2HP52434 150 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 MAP2K6P52564 334 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 DLX5P56178 289 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 EPS8Q12929 822 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 CAPRIN1Q14444 709 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 CDSNQ15517 529 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 CTU2Q2VPK5 515 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 GTF2IRD2BQ6EKJ0 949 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 POMZP3Q6PJE2 187 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 GTF2IRD2Q86UP8 949 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 MCEMP1Q8IX19 187 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 GCNT2Q8N0V5 402 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 RELL2Q8NC24 303 aaPredicted RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms