RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 KLHDC3Q9BQ90 382 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 SLC35A5Q9BS91 424 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 MED18Q9BUE0 208 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 THUMPD3Q9BV44 507 aaKnown RBP4.28□□□□□ -1.72
CLK3-219ENST00000567805 LAT2Q9GZY6 243 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 SAP130Q9H0E3 1048 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 OR10A4Q9H209 315 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 OR51I1Q9H343 314 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 TMEM185BQ9H7F4 350 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 MANSC1Q9H8J5 431 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 TMBIM4Q9HC24 238 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 GP6Q9HCN6 339 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 AIG1Q9NVV5 245 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 KLHL28Q9NXS3 571 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 NKIRAS1Q9NYS0 192 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 MARCOQ9UEW3 520 aaPredicted RBP4.28□□□□□ -1.72
CLK3-219ENST00000567805 MKLN1Q9UL63 735 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 SLC35A3Q9Y2D2 325 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 PLEKHA6Q9Y2H5 1048 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 WDR45Q9Y484 360 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 GPR45Q9Y5Y3 372 aa4.28□□□□□ -1.72
CLK3-219ENST00000567805 DSCAMO60469 2012 aa4.28□□□□□ -1.73
CLK3-219ENST00000567805 FREM1Q5H8C1 2179 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 F8P00451 2351 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 GOLGA8QA0A0J9YX86 632 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CENPVL1A0A0U1RR11 272 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 GOLGA8OA6NCC3 632 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CCDC154A6NI56 674 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 DEFB108AA8MXU0 73 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 GOLGA8NF8WBI6 632 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 HMGN4O00479 90 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 KLF11O14901 512 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 EFNA2O43921 213 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SLC22A3O75751 556 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CYP7B1O75881 506 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ATE1O95260 518 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 H6PDO95479 791 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CPSF4O95639 269 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 CSTAP01040 98 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 IL6P05231 212 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 UBTFL6P0CB48 400 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 OR12D1P0DN82 309 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 KITP10721 976 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 IDO1P14902 403 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PPP3CBP16298 524 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PGCP20142 388 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 FKBP2P26885 142 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 EPHA3P29320 983 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SHC1P29353 583 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 IL12AP29459 219 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SLC7A1P30825 629 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PGM1P36871 562 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 MAGEA8P43361 318 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 RNF144AP50876 292 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 ANXA11P50995 505 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 CCR4P51679 360 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 CASP9P55211 416 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 NME5P56597 212 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 RIPPLY3P57055 190 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SESN3P58005 492 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 RAC3P60763 192 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 UFM1P61960 85 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PPP2R2AP63151 447 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 HPCAP84074 193 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 FUT5Q11128 374 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 POU4F3Q15319 338 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TOMM34Q15785 309 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 MAPK14Q16539 360 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 GSTA3Q16772 222 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 EXOC3L2Q2M3D2 409 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 DEFB113Q30KQ7 82 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 NDUFAF6Q330K2 333 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TMEM176BQ3YBM2 270 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 TIGD2Q4W5G0 525 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PDCD4Q53EL6 469 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 GPAT3Q53EU6 434 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TMEM201Q5SNT2 666 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 XP32Q5T750 250 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 NXNQ6DKJ4 435 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TYW3Q6IPR3 259 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 STAC2Q6ZMT1 411 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 FRRS1Q6ZNA5 592 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 FCRLAQ7L513 359 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ZNF550Q7Z398 422 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TGIF2LYQ8IUE0 185 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ZNF619Q8N2I2 560 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SLC43A2Q8N370 569 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 ZNF511Q8NB15 262 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 RFWD2Q8NHY2 731 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 PIWIL2Q8TC59 973 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 ABHD3Q8WU67 409 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 SLC25A43Q8WUT9 341 aaPredicted RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 ROBO4Q8WZ75 1007 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 RAB8BQ92930 207 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 MAELQ96JY0 434 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 MARK4Q96L34 752 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TRNT1Q96Q11 434 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 OR52E6Q96RD3 313 aa4.27□□□□□ -1.73
CLK3-219ENST00000567805 TACO1Q9BSH4 297 aaKnown RBP4.27□□□□□ -1.73
CLK3-219ENST00000567805 SRXN1Q9BYN0 137 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms