RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	INPP5K	Q9BT40	448 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	THUMPD3	Q9BV44	507 aa	Known RBP	6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF350	Q9GZX5	532 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	SAP130	Q9H0E3	1048 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	TMEM185B	Q9H7F4	350 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF226	Q9NYT6	803 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	MARCO	Q9UEW3	520 aa	Predicted RBP	6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	KCNE5	Q9UJ90	142 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	CLEC4A	Q9UMR7	237 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	WDR45	Q9Y484	360 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635	TESMIN	Q9Y4I5	508 aa		6.19	□□□□□ -1.42
SF3B3-209	ENST00000567635		C9JVG2	144 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ETV2	O00321	342 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	HMGN4	O00479	90 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLF11	O14901	512 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	UBD	O15205	165 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SS18L1	O75177	396 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	UGT2B17	O75795	530 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PRKD3	O94806	890 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	NTN1	O95631	604 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	KRT75	O95678	551 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	HRG	P04196	525 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	GSN	P06396	782 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	UBTFL6	P0CB48	400 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PPP3CB	P16298	524 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PGC	P20142	388 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SHC1	P29353	583 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SLC7A1	P30825	629 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MAGEA8	P43361	318 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	CCR4	P51679	360 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	GYS2	P54840	703 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SESN3	P58005	492 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	TXNL4A	P83876	142 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SELENBP1	Q13228	472 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SKP2	Q13309	424 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	QPRT	Q15274	297 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	RNPS1	Q15287	305 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MAPK14	Q16539	360 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF239	Q16600	458 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	GSTA3	Q16772	222 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	EXOC3L2	Q2M3D2	409 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	TIGD2	Q4W5G0	525 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SLC9B1	Q4ZJI4	515 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PDCD4	Q53EL6	469 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	GPAT3	Q53EU6	434 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ANKRD34A	Q69YU3	496 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	TYW3	Q6IPR3	259 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	BEND4	Q6ZU67	534 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	OLIG3	Q7RTU3	272 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	STK32C	Q86UX6	486 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF619	Q8N2I2	560 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ARFGAP2	Q8N6H7	521 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	OR6K3	Q8NGY3	331 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PIWIL2	Q8TC59	973 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	TMEM234	Q8WY98	164 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ST8SIA1	Q92185	356 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PMM1	Q92871	262 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	CPNE4	Q96A23	557 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	RNF166	Q96A37	237 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZNF524	Q96C55	264 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZG16B	Q96DA0	208 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MBD6	Q96DN6	1003 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MAEL	Q96JY0	434 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	TRNT1	Q96Q11	434 aa	Known RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PANX1	Q96RD7	426 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MED18	Q9BUE0	208 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLHL4	Q9C0H6	718 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	CXXC4	Q9H2H0	198 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PLEKHF2	Q9H8W4	249 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	MTHFD2L	Q9H903	347 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	GP6	Q9HCN6	339 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	FANCF	Q9NPI8	374 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SERINC1	Q9NRX5	453 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	ACER3	Q9NUN7	267 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	KLHL28	Q9NXS3	571 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	LIPT1	Q9Y234	373 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	SLC35A3	Q9Y2D2	325 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	PLEKHA6	Q9Y2H5	1048 aa		6.18	□□□□□ -1.42
SF3B3-209	ENST00000567635	CSMD1	Q96PZ7	3565 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	CENPVL1	A0A0U1RR11	272 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	PRAMEF27	A3QJZ7	478 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	AGAP5	A6NIR3	686 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	RFXANK	O14593	260 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	KIAA0513	O60268	411 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	DIAPH2	O60879	1101 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	TGDS	O95455	350 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	H6PD	O95479	791 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	C1QC	P02747	245 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	RAF1	P04049	648 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	YES1	P07947	543 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	ZCCHC18	P0CG32	403 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	NR2F1	P10589	423 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	NID1	P14543	1247 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	CRYGS	P22914	178 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	FKBP2	P26885	142 aa	Known RBP	6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	PGM1	P36871	562 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	APOBEC1	P41238	236 aa	Known RBP	6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	CDKN2C	P42773	168 aa		6.17	□□□□□ -1.42
SF3B3-209	ENST00000567635	POLR2J	P52435	117 aa	Known RBP	6.17	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 40 ms