RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 PPP4R4Q6NUP7 873 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 C3orf33Q6P1S2 294 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZNF440Q8IYI8 595 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZNF295-AS1Q8N0V1 137 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 CNEP1R1Q8N9A8 125 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 FAM71CQ8NEG0 241 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 FNDC9Q8TBE3 224 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 FIG4Q92562 907 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 OSTF1Q92882 214 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 CPNE4Q96A23 557 aaPredicted RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZG16BQ96DA0 208 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZNF845Q96IR2 970 aaPredicted RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 ADGRG7Q96K78 797 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 NPAS1Q99742 590 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZNF559Q9BR84 538 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ACER3Q9NUN7 267 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 LEF1Q9UJU2 399 aaPredicted RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 ITGB1BP2Q9UKP3 347 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ZNF232Q9UNY5 417 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 SPIN1Q9Y657 262 aaPredicted RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 A0A0G2JPF8 293 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 A0A0J9YW62 118 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 CENPVL1A0A0U1RR11 272 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 EVPLLA8MZ36 301 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 HNRNPCL2B2RXH8 293 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 HNRNPCL3B7ZW38 293 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 CXCL13O43927 109 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 HNRNPCL1O60812 293 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 NTN1O95631 604 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 PLGP00747 810 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 C1QCP02747 245 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 BCHEP06276 602 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 VIMP08670 466 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 TFPTP0C1Z6 253 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 HNRNPCL4P0DMR1 293 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 NID1P14543 1247 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 CAPN3P20807 821 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 SLC7A1P30825 629 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 SFTPDP35247 375 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 APOBEC1P41238 236 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 KIR2DL3P43628 341 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 DLX5P56178 289 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 CTBP2P56545 445 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 SESN3P58005 492 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 TLE4Q04727 773 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 LARS2Q15031 903 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 RGNQ15493 299 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 TOMM34Q15785 309 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 CTU2Q2VPK5 515 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 TMEM176BQ3YBM2 270 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 GTDC1Q4AE62 458 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 LIN52Q52LA3 116 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 PRAMEF8Q5VWM4 474 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 PRAMEF7Q5VXH5 474 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 PLXDC2Q6UX71 529 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 SLC25A43Q8WUT9 341 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 AURKBQ96GD4 344 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 GMPPAQ96IJ6 420 aaPredicted RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 KLHDC3Q9BQ90 382 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 RBM24Q9BX46 236 aaKnown RBP12.02□□□□□ -0.49
CLK3-216ENST00000564468 TMEM185BQ9H7F4 350 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 MCCC2Q9HCC0 563 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 IFT52Q9Y366 437 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 NDUFAF1Q9Y375 327 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 EMC9Q9Y3B6 208 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 GMEB1Q9Y692 573 aa12.02□□□□□ -0.49
CLK3-216ENST00000564468 A8MXE2 369 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 C5orf58C9J3I9 102 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 ANGPT2O15123 496 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 TNFSF13O75888 250 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 SMNDC1O75940 238 aaKnown RBP eCLIP12.01□□□□□ -0.49
CLK3-216ENST00000564468 OPN1LWP04000 364 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 BMP2P12643 396 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 RPS4Y1P22090 263 aaKnown RBP12.01□□□□□ -0.49
CLK3-216ENST00000564468 RYKP34925 604 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 HTR3AP46098 478 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 PCYT1AP49585 367 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 ARFIP2P53365 341 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 MERTKQ12866 999 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 FAM214BQ7L5A3 538 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 GRINAQ7Z429 371 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 LUZP2Q86TE4 346 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 ATP6V1C2Q8NEY4 427 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 OR52P1PQ8NH57 321 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 FAM222BQ8WU58 562 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 SLC38A5Q8WUX1 472 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 TMEM19Q96HH6 336 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 QRSL1Q9H0R6 528 aaKnown RBP12.01□□□□□ -0.49
CLK3-216ENST00000564468 CCDC134Q9H6E4 229 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 A4GALTQ9NPC4 353 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 FANCFQ9NPI8 374 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 SLC52A3Q9NQ40 469 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.01□□□□□ -0.49
CLK3-216ENST00000564468 FREM1Q5H8C1 2179 aa12.01□□□□□ -0.49
CLK3-216ENST00000564468 TUBAL3A6NHL2 446 aa12□□□□□ -0.49
CLK3-216ENST00000564468 FAAHO00519 579 aa12□□□□□ -0.49
CLK3-216ENST00000564468 EFNA2O43921 213 aa12□□□□□ -0.49
CLK3-216ENST00000564468 AQP8O94778 261 aa12□□□□□ -0.49
CLK3-216ENST00000564468 THBS1P07996 1170 aa12□□□□□ -0.49
CLK3-216ENST00000564468 CD8BP10966 210 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms