RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 FAM46AQ96IP4 442 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 SNX18Q96RF0 628 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CRB3Q9BUF7 120 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 RBCK1Q9BYM8 510 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 QRSL1Q9H0R6 528 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 KCNN2Q9H2S1 579 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 OR52D1Q9H346 318 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 FKRPQ9H9S5 495 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ERVK-18Q9QC07 812 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CRNNQ9UBG3 495 aaPredicted RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 DHCR7Q9UBM7 475 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 ZNF229Q9UJW7 825 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 ICAM5Q9UMF0 924 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 GSTK1Q9Y2Q3 226 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 PCDHGA1Q9Y5H4 931 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CLDN16Q9Y5I7 305 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 CORINQ9Y5Q5 1042 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 MAU2Q9Y6X3 613 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 REV3LO60673 3130 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 TDRD6O60522 2096 aaKnown RBP6.92□□□□□ -1.3
VPS39-204ENST00000561818 SZT2Q5T011 3432 aa6.92□□□□□ -1.3
VPS39-204ENST00000561818 EML5Q05BV3 1969 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 NPIPB13A6NJU9 1138 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 IDSB3KWA1 339 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 NPIPB4C9JG80 1138 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MEN1O00255 615 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 TP53I11O14683 189 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PHYHO14832 338 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SLC30A4O14863 429 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 AIREO43918 545 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ENTPD6O75354 484 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 REM1O75628 298 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 HTR1AP08908 422 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SP9P0CG40 484 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 GP1BBP13224 206 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PAX7P23759 505 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 EPHA2P29317 976 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 S100A5P33763 92 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SOX18P35713 384 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ACAA2P42765 397 aaKnown RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 OR1D4P47884 311 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 RGS6P49758 472 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 P2RX1P51575 399 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 POLR2HP52434 150 aaKnown RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 GP2P55259 537 aaKnown RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 DLX5P56178 289 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 BTG2P78543 158 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 FOXK1P85037 733 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 CFHR1Q03591 330 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 RUNX1T1Q06455 604 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SKP2Q13309 424 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 KCNAB1Q14722 419 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MAPK14Q16539 360 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 DCAF12Q5T6F0 453 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 FNDC7Q5VTL7 733 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 TMEM205Q6UW68 189 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PAMR1Q6UXH9 720 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 NPSR1Q6W5P4 371 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 LINC00114Q6XXX2 140 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 DGLUCYQ7Z3D6 616 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SLC46A3Q7Z3Q1 461 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 GRINAQ7Z429 371 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 CPEB2Q7Z5Q1 589 aaKnown RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 LAPTM4BQ86VI4 370 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 CCDC103Q8IW40 242 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 KLHL36Q8N4N3 616 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ZNF441Q8N8Z8 693 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MINDY2Q8NBR6 621 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ZNF563Q8TA94 476 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PHOSPHO1Q8TCT1 267 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 STK35Q8TDR2 534 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 TMEM255BQ8WV15 326 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 UFD1Q92890 307 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ZHX1-C8orf76Q96EF9 292 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ZNF582Q96NG8 517 aaPredicted RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 IP6K3Q96PC2 410 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 GAL3ST4Q96RP7 486 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MGLLQ99685 303 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SH3GL3Q99963 347 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PRSS27Q9BQR3 290 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 DDA1Q9BW61 102 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 IFT27Q9BW83 186 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MMP27Q9H306 513 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 UBQLN3Q9H347 655 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PLGRKTQ9HBL7 147 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 TMEM74BQ9NUR3 256 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 PAK1IP1Q9NWT1 392 aaPredicted RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 GPR83Q9NYM4 423 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 CNIH4Q9P003 139 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 ZNF223Q9UK11 482 aaPredicted RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 SSR3Q9UNL2 185 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 MOKQ9UQ07 419 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 SIGLEC7Q9Y286 467 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 B3GNT3Q9Y2A9 372 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 CAB39Q9Y376 341 aaPredicted RBP6.91□□□□□ -1.3
VPS39-204ENST00000561818 CHST2Q9Y4C5 530 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 NOX1Q9Y5S8 564 aa6.91□□□□□ -1.3
VPS39-204ENST00000561818 A0A087WZY1 265 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 LOC102723996A0A087X1L8 192 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 LY6G6EA0A0G2JKS1 128 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms