RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 SAXO2Q658L1 398 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 HEPHL1Q6MZM0 1159 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 TFAP2EQ6VUC0 442 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 ZNF704Q6ZNC4 412 aaPredicted RBP9.09□□□□□ -0.95
LDLR-214ENST00000560628 C20orf204Q6ZNR8 217 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 PLEKHM3Q6ZWE6 761 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 EIF3MQ7L2H7 374 aaKnown RBP9.09□□□□□ -0.95
LDLR-214ENST00000560628 YTHDF3Q7Z739 585 aaKnown RBP9.09□□□□□ -0.95
LDLR-214ENST00000560628 BIVMQ86UB2 503 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 LSRQ86X29 649 aaPredicted RBP9.09□□□□□ -0.95
LDLR-214ENST00000560628 GABRG1Q8N1C3 465 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 VPS37AQ8NEZ2 397 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 STEAP2Q8NFT2 490 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 MIPOL1Q8TD10 442 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 ARL8AQ96BM9 186 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 ROPN1LQ96C74 230 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 DNAJA3Q96EY1 480 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 TEX37Q96LM6 180 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 Q96MF0 132 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 HDHD5Q9BXW7 423 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 ZNF350Q9GZX5 532 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 SERINC1Q9NRX5 453 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 WDR45Q9Y484 360 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 MAP1AP78559 2803 aaPredicted RBP9.09□□□□□ -0.95
LDLR-214ENST00000560628 ROS1P08922 2347 aa9.09□□□□□ -0.95
LDLR-214ENST00000560628 PRAMEF27A3QJZ7 478 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 CLDN24A6NM45 220 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ZNF814B7Z6K7 855 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 H7C1Q1 480 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 SMAD7O15105 426 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 DNAJA2O60884 412 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 GCM2O75603 506 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 AGR2O95994 175 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ALDOCP09972 364 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 TFPIP10646 304 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 PGCP20142 388 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 CCNA2P20248 432 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 IL32P24001 234 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 PGM1P36871 562 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 NR1H2P55055 460 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 CHRNEQ04844 493 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 RASGEF1BQ0VAM2 473 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 FUT5Q11128 374 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 CAPRIN1Q14444 709 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 FAM174BQ3ZCQ3 159 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 GPAT3Q53EU6 434 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 TNFAIP8L3Q5GJ75 292 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 SFRP5Q5T4F7 317 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 TYW3Q6IPR3 259 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 CLEC9AQ6UXN8 241 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 LRRC75A-AS1Q8N1F1 130 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 SLC43A2Q8N370 569 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ZNF563Q8TA94 476 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 RAB3IL1Q8TBN0 382 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 MGARPQ8TDB4 240 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 AKAP1Q92667 903 aaKnown RBP eCLIP9.08□□□□□ -0.962e-8■■■■■ 26.9
LDLR-214ENST00000560628 TESCQ96BS2 214 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ZNF300Q96RE9 604 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 SLC35A5Q9BS91 424 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 TACO1Q9BSH4 297 aaKnown RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 INPP5KQ9BT40 448 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 WDR55Q9H6Y2 383 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 MEAF6Q9HAF1 191 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ACER3Q9NUN7 267 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 MARCOQ9UEW3 520 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 PRSS50Q9UI38 385 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 HAO1Q9UJM8 370 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ING1Q9UK53 422 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 RAB21Q9UL25 225 aa9.08□□□□□ -0.96
LDLR-214ENST00000560628 ZNF469Q96JG9 3925 aaPredicted RBP9.08□□□□□ -0.96
LDLR-214ENST00000560628 DSCAMO60469 2012 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 HEATR5AQ86XA9 2040 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 GOLGA8QA0A0J9YX86 632 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 GOLGA8OA6NCC3 632 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TRIM64A6NGJ6 449 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 TRIM64BA6NI03 449 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CCDC154A6NI56 674 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 E9PBE3 544 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 GOLGA8NF8WBI6 632 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 SULT2B1O00204 365 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 ETV2O00321 342 aaPredicted RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 SDHDO14521 159 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 HS3ST1O14792 307 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 SMAD9O15198 467 aaKnown RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 KIAA0513O60268 411 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CYTIPO60759 359 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 SNUPNO95149 360 aaKnown RBP9.07□□□□□ -0.96
LDLR-214ENST00000560628 LY6G6DO95868 133 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 GSNP06396 782 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 FESP07332 822 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 KITP10721 976 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 EDNRAP25101 427 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 EPHA3P29320 983 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 IL12AP29459 219 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CDKN2CP42773 168 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 PTH2RP49190 550 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 DIO1P49895 249 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 KHKP50053 298 aa9.07□□□□□ -0.96
LDLR-214ENST00000560628 CLNS1AP54105 237 aaKnown RBP9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms