RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SFXN2Q96NB2 322 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 TAAR6Q96RI8 345 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 MCHR1Q99705 422 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 MAGIXQ9H6Y5 334 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 C12orf10Q9HB07 376 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 SLC7A8Q9UHI5 535 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 POMPQ9Y244 141 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 VDAC3Q9Y277 283 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 AP4B1Q9Y6B7 739 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 KIAA1549Q9HCM3 1950 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 ASH1LQ9NR48 2969 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 PHF3Q92576 2039 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 A0A1B0GVC2 190 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 OR14I1A6ND48 311 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 AQP7O14520 342 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 ACOT8O14734 319 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 OIP5O43482 229 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 RRP9O43818 475 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 GMFGO60234 142 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 ZIC3O60481 467 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PRKD3O94806 890 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 GPIP06744 558 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 RFPL3SP0C7P2 107 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 THRBP10828 461 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PNMTP11086 282 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 NQO1P15559 274 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 PRKCAP17252 672 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 CXCR1P25024 350 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PSMA4P25789 261 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 ELK4P28324 431 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 ACAA2P42765 397 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 CLK1P49759 484 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 RNF144AP50876 292 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 POLR2HP52434 150 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 DLX5P56178 289 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 SMIM11AP58511 58 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 TAS2R41P59536 307 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 MS4A2Q01362 244 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 MERTKQ12866 999 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 OR1Q1Q15612 314 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 BCL2A1Q16548 175 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PLPPR5Q32ZL2 321 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 NDUFAF6Q330K2 333 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 GLIPR1L2Q4G1C9 344 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 WIPI1Q5MNZ9 446 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 ZNF324BQ6AW86 544 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 ULK3Q6PHR2 472 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 C5orf46Q6UWT4 87 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PLEKHM3Q6ZWE6 761 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 CHMP1BQ7LBR1 199 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 SPATA24Q86W54 205 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 SIAH3Q8IW03 269 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 PM20D2Q8IYS1 436 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 GTPBP8Q8N3Z3 284 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 VANGL1Q8TAA9 524 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 NEIL3Q8TAT5 605 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 SLC25A43Q8WUT9 341 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 ABTB1Q969K4 478 aaPredicted RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 SLC47A1Q96FL8 570 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 RSRC1Q96IZ7 334 aaKnown RBP8.37□□□□□ -1.07
LDLR-210ENST00000559340 ZNF347Q96SE7 839 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 ASF1BQ9NVP2 202 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 CHST2Q9Y4C5 530 aa8.37□□□□□ -1.07
LDLR-210ENST00000559340 SETXQ7Z333 2677 aaKnown RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 NBASA2RRP1 2371 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 POLEQ07864 2286 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 OR2M5A3KFT3 312 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 TRAPPC13A5PLN9 417 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ELOA3DA6NLF2 546 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 M0R3H8 397 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ETV2O00321 342 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 BCKDKO14874 412 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 OR5F1O95221 314 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 FABP3P05413 133 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 HOXD4P09016 255 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 RHCEP18577 417 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ATP6V1B2P21281 511 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ZNF136P52737 540 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 CRYBA2P53672 197 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 CASP6P55212 293 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 RPS3AP61247 264 aaKnown RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 RAC1P63000 192 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ST3GAL3Q11203 375 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 SELENBP1Q13228 472 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ELOA3BQ3SY89 546 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 CMPK2Q5EBM0 449 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 NHSL2Q5HYW2 709 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 RNFT1Q5M7Z0 435 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 SWT1Q5T5J6 900 aaKnown RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 WLSQ5T9L3 541 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ARSKQ6UWY0 536 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 GFRALQ6UXV0 394 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 DEF8Q6ZN54 512 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ZNF771Q7L3S4 317 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 VTCN1Q7Z7D3 282 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 MEIOBQ8N635 442 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ELOA3Q8NG57 546 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 OR6T1Q8NGN1 323 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 RNF217Q8TC41 542 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 MPP4Q96JB8 637 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms