RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MDH2P40926 338 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 QARSP47897 775 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 RPL29P47914 159 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 CCT3P49368 545 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 PRKXP51817 358 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 BIDP55957 195 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 RIPPLY1Q0D2K3 151 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 ASAH1Q13510 395 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 TRIM16LQ309B1 348 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 GLYR1Q49A26 553 aaPredicted RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 SBK1Q52WX2 424 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 PAN3Q58A45 887 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 DMRTC1Q5HYR2 192 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 GPRC6AQ5T6X5 926 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 LCE1CQ5T751 118 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 LCE1BQ5T7P3 118 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 LIPNQ5VXI9 398 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 OR2A2Q6IF42 318 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 CGB2Q6NT52 195 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 FAAP20Q6NZ36 180 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 METTL7BQ6UX53 244 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 CXCL17Q6UXB2 119 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 C19orf35Q6ZS72 473 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 STXBP4Q6ZWJ1 553 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 TPRA1Q86W33 373 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 ZNF677Q86XU0 584 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 HPS6Q86YV9 775 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 SLC35F2Q8IXU6 374 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 DHRSXQ8N5I4 330 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 ALLCQ8N6M5 410 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 ZNF485Q8NCK3 441 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 KLHL30-AS1Q8NEE0 82 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 OR56B4Q8NH76 319 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 AGAP11Q8TF27 550 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 AENQ8WTP8 325 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 FAM222BQ8WU58 562 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 C10orf35Q96D05 121 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 HAVCR1Q96D42 359 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 C7orf34Q96L11 122 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 C12orf42Q96LP6 360 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 C1orf147Q96MC9 270 aaPredicted RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 NAP1L5Q96NT1 182 aaPredicted RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 IL4I1Q96RQ9 567 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 MCHR1Q99705 422 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 CITED1Q99966 193 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 APOL2Q9BQE5 337 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 DPH7Q9BTV6 452 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 RNF126Q9BV68 326 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 TRIM62Q9BVG3 475 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 PPDPFQ9H3Y8 114 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 AZI2Q9H6S1 392 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 FN3KRPQ9HA64 309 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 HYPKQ9NX55 129 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 HOXC10Q9NYD6 342 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 COX16Q9P0S2 106 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 Q9UF83 564 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 WARS2Q9UGM6 360 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 IKBKGQ9Y6K9 419 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 PRSS21Q9Y6M0 314 aa1.24□□□□□ -2.21
USP3-209ENST00000558925 DDX49Q9Y6V7 483 aaKnown RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 RAI1Q7Z5J4 1906 aaPredicted RBP1.24□□□□□ -2.21
USP3-209ENST00000558925 A0A1W2PNV4 684 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 OR2AG2A6NM03 316 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 OR52A4PA6NMU1 304 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 TRDCB7Z8K6 153 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 NPIPA7E9PJI5 369 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 SULT2B1O00204 365 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 GPAA1O43292 621 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 MED7O43513 233 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 N4BP1O75113 896 aaKnown RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 ECI2O75521 394 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 GNA14O95837 355 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 THY1P04216 161 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 OR8U8P0C7N1 319 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 RBMY1CP0DJD4 496 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 NPIPA8P0DM63 369 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 ATP1B2P14415 290 aaPredicted RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 ETS2P15036 469 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 IGLL1P15814 213 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 NCF2P19878 526 aaPredicted RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 IMPDH1P20839 514 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 GDF1P27539 372 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 HTR1FP30939 366 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 FGF9P31371 208 aaPredicted RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 HNRNPH3P31942 346 aaKnown RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 EPHX2P34913 555 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 GCKP35557 465 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 MAP3K8P41279 467 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 FNTAP49354 379 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 DUSP3P51452 185 aaPredicted RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 TPMTP51580 245 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 EFNB2P52799 333 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 SLC25A1P53007 311 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 KRTAP10-1P60331 282 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 ACTR3P61158 418 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 LMO4P61968 165 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 RPS8P62241 208 aaKnown RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 MRPS11P82912 194 aaKnown RBP1.23□□□□□ -2.21
USP3-209ENST00000558925 CDK16Q00536 496 aa1.23□□□□□ -2.21
USP3-209ENST00000558925 CSTF1Q05048 431 aaKnown RBP1.23□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms