RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ADGRL4Q9HBW9 690 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SDK1Q7Z5N4 2213 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SLC9B1P1A6NJY1 282 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 C4orf47A7E2U8 309 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 INMT-MINDY4F8WBC2 141 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 PSMD9O00233 223 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CELA2BP08218 269 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 TRAPPC2P0DI81 140 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 TRAPPC2BP0DI82 140 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 FAM53BQ14153 422 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ITPRIPL2Q3MIP1 535 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 BCL2L15Q5TBC7 163 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 MZT2BQ6NZ67 158 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SFXN4Q6P4A7 337 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 MZT2AQ6P582 158 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 C7orf61Q8IZ16 206 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 GHSRQ92847 366 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SLC28A3Q9HAS3 691 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CACYBPQ9HB71 228 aaKnown RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 WDFY3Q8IZQ1 3526 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 A0A0G2JK05 382 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CD3GP09693 182 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SBK2P0C263 348 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 TLX1P31314 330 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 NAA10P41227 235 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 ADAM15Q13444 863 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 THOC7Q6I9Y2 204 aaKnown RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 LAMTOR1Q6IAA8 161 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SDR9C7Q8NEX9 313 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 OR4K13Q8NH42 304 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SCARF2Q96GP6 870 aaPredicted RBP11.91□□□□□ -0.5
LDLR-207ENST00000558013 ABCG5Q9H222 651 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 TRPV4Q9HBA0 871 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CMC2Q9NRP2 79 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 CYSLTR2Q9NS75 346 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ACOXLQ9NUZ1 547 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 ACTR10Q9NZ32 417 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 DTX4Q9Y2E6 619 aa11.91□□□□□ -0.5
LDLR-207ENST00000558013 SNRPBP14678 240 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 ARFIP1P53367 373 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 MGAT2Q10469 447 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 SF3A2Q15428 464 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 HBMQ6B0K9 141 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 FAAH2Q6GMR7 532 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 GID4Q8IVV7 300 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 IZUMO1Q8IYV9 350 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 OR5M3Q8NGP4 307 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 NT5CQ8TCD5 201 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 SMPDL3BQ92485 455 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 NR4A3Q92570 626 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 TRIM63Q969Q1 353 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 PGLYRP3Q96LB9 341 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 ERVMER34-1Q9H9K5 563 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 TRIM36Q9NQ86 728 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 PHF11Q9UIL8 331 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 ZNF346Q9UL40 294 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 ADAM18Q9Y3Q7 739 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 A0A0A6YYJ9 748 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 EPOPA6NHQ4 379 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 CYR61O00622 381 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 IGKV1D-16P01601 117 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 DBIP07108 87 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 HOXB2P14652 356 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 BMP8BP34820 402 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 BTCP35070 178 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 GZMKP49863 264 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 FHL1Q13642 323 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 PRICKLE4Q2TBC4 344 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 BTBD16Q32M84 506 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 FAM205BPQ63HN1 556 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 ANKRD54Q6NXT1 300 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 BMP8AQ7Z5Y6 402 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 OAFQ86UD1 273 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 TRMT10AQ8TBZ6 339 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 GCDHQ92947 438 aaPredicted RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 ZC3HAV1LQ96H79 300 aaKnown RBP11.9□□□□□ -0.5
LDLR-207ENST00000558013 ZFP3Q96NJ6 502 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 COQ7Q99807 217 aa11.9□□□□□ -0.5
LDLR-207ENST00000558013 A0A1B0GWA3 101 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 SERPINI2O75830 405 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 KLF8O95600 359 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 TFP02787 698 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 THBS1P07996 1170 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 RPS4Y1P22090 263 aaKnown RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 HTR2BP41595 481 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 MTNR1BP49286 362 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 VSX2P58304 361 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 RRAS2P62070 204 aaPredicted RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 ERV3-1Q14264 604 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 AMZ1Q400G9 498 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 ACSM3Q53FZ2 586 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 GARNL3Q5VVW2 1013 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 PRSS45Q7RTY3 260 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 TIGD4Q8IY51 512 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 DEDD2Q8WXF8 326 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 MS4A3Q96HJ5 214 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 AHCYL2Q96HN2 611 aaKnown RBP11.89□□□□□ -0.51
LDLR-207ENST00000558013 NDC1Q9BTX1 674 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 PBX4Q9BYU1 374 aa11.89□□□□□ -0.51
LDLR-207ENST00000558013 KCNN2Q9H2S1 579 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms