RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-233	ENST00000557529	HHATL	Q9HCP6	504 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MMP25	Q9NPA2	562 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	C20orf141	Q9NUB4	165 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PAK1IP1	Q9NWT1	392 aa	Predicted RBP	11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	TVP23B	Q9NYZ1	205 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	MYOT	Q9UBF9	498 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PSORS1C1	Q9UIG5	152 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	PCDHGB1	Q9Y5G3	927 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	HS3ST3B1	Q9Y662	390 aa		11.42	□□□□□ -0.58
SHMT2-233	ENST00000557529	EFCAB10	A6NFE3	127 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ELOA3D	A6NLF2	546 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CLCA1	A8K7I4	914 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	C9orf172	C9J069	976 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	KPNA4	O00629	521 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CDC42EP2	O14613	210 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	IGF2	P01344	180 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	HMGN1	P05114	100 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	BMP7	P18075	431 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TCN2	P20062	427 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	PGC	P20142	388 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC1A3	P43003	542 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CLDN6	P56747	220 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	RPS15	P62841	145 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	NEDD8	Q15843	81 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ELOA3B	Q3SY89	546 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	DESI1	Q6ICB0	168 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ACSM5	Q6NUN0	579 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CBLN3	Q6UW01	205 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	NDUFAF7	Q7L592	441 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TIPARP	Q7Z3E1	657 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CYP4Z2P	Q8N1L4	340 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FAM26E	Q8N5C1	309 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TCEANC	Q8N8B7	351 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ELOA3	Q8NG57	546 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR2T33	Q8NG76	320 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR8D4	Q8NGM9	314 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR5W2	Q8NH69	310 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ZNF563	Q8TA94	476 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FANK1	Q8TC84	345 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	THAP3	Q8WTV1	239 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CT55	Q8WUE5	264 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	NACC2	Q96BF6	587 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ARSG	Q96EG1	525 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	IL4I1	Q96RQ9	567 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	COPS4	Q9BT78	406 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMEM43	Q9BTV4	400 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	DPH1	Q9BZG8	443 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	MEPE	Q9NQ76	525 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	MED17	Q9NVC6	651 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FKBP14	Q9NWM8	211 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CNOT2	Q9NZN8	540 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ERVK-18	Q9QC07	812 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TCFL5	Q9UL49	500 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ICAM5	Q9UMF0	924 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FARSA	Q9Y285	508 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	NSG1	A0A0A6YYJ2	146 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	PMS2P1	A4D2B8	440 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SNTN	A6NMZ2	147 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ENO4	A6NNW6	628 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529		M0R129	80 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SOCS6	O14544	535 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SCO2	O43819	266 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CDC40	O60508	579 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FBXO45	P0C2W1	286 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SAG	P10523	405 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ITPKB	P27987	946 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SLC9A3	P48764	834 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	P2RX1	P51575	399 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FBXW4	P57775	412 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CRYZ	Q08257	329 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TUBA3C	Q13748	450 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CBFB	Q13951	182 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SSPN	Q14714	243 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SNAPC1	Q16533	368 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMEM44	Q2T9K0	475 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	PGGHG	Q32M88	737 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	C3orf38	Q5JPI3	329 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	FAM69B	Q5VUD6	431 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	C16orf47	Q6ZP98	133 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	AHSA2	Q719I0	299 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ATG4D	Q86TL0	474 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	CACTIN-AS1	Q8N1I8	211 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR11G2	Q8NGC1	345 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	B4GALNT2	Q8NHY0	566 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	TMEM163	Q8TC26	289 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SGCD	Q92629	289 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SGTB	Q96EQ0	304 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SH3YL1	Q96HL8	342 aa	Predicted RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	PLEKHA8	Q96JA3	519 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	SAMD8	Q96LT4	415 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	LRFN3	Q9BTN0	628 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	GPR87	Q9BY21	358 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	OR52D1	Q9H346	318 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	ATP13A2	Q9NQ11	1180 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	BAIAP2	Q9UQB8	552 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	RPL36	Q9Y3U8	105 aa	Known RBP	11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	PCDHGB6	Q9Y5F9	930 aa		11.41	□□□□□ -0.58
SHMT2-233	ENST00000557529	KIF26B	Q2KJY2	2108 aa		11.4	□□□□□ -0.58
SHMT2-233	ENST00000557529		A0A1W2PNU3	283 aa	Predicted RBP	11.4	□□□□□ -0.59
SHMT2-233	ENST00000557529	CCDC160	A6NGH7	325 aa		11.4	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms