RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SMIM31A0A1B0GVY4 71 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SMPD2O60906 423 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 GCM2O75603 506 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SNAP29O95721 258 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CLPTM1O96005 669 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CLPSP04118 112 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 P04436 131 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CELA3AP09093 270 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 PABPC4LP0CB38 370 aaKnown RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CCL3P10147 92 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CSNK2A2P19784 350 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 BMP5P22003 454 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 GALNSP34059 522 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SOAT1P35610 550 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 PIGAP37287 484 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 MAGEA8P43361 318 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 RPL5P46777 297 aaKnown RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 DNASE1L1P49184 302 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 PRIM2P49643 509 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 ASCL1P50553 236 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 MANFP55145 182 aaKnown RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SCARB2Q14108 478 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 RFX4Q33E94 735 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 COX20Q5RI15 118 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 OTUD3Q5T2D3 398 aaPredicted RBP11.35□□□□□ -0.59
SHMT2-230ENST00000557427 RNF220Q5VTB9 566 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SLC22A10Q63ZE4 541 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SLC48A1Q6P1K1 146 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 PODNL1Q6PEZ8 512 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 FAM111BQ6SJ93 734 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 ANGPTL8Q6UXH0 198 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 TRILQ7L0X0 811 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 RNF130Q86XS8 419 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CCDC116Q8IYX3 515 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CYGBQ8WWM9 190 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 SGCZQ96LD1 299 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 PIP5K1AQ99755 562 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 DOHHQ9BU89 302 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 WWTR1Q9GZV5 400 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 CXorf36Q9H7Y0 433 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 BAG5Q9UL15 447 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 ANGPT4Q9Y264 503 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 ZNF780BQ9Y6R6 833 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 ARHGAP21Q5T5U3 1957 aa11.35□□□□□ -0.59
SHMT2-230ENST00000557427 MBD3L4A6NDZ8 208 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 MBD3L5A6NJ08 208 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 OR6C76A6NM76 312 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 VGLL3A8MV65 326 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 KDM4EB2RXH2 506 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 WDR1O75083 606 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 E2F6O75461 281 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 GLSO94925 669 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 IFNA14P01570 189 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TFAP2AP05549 437 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ENDOUP21128 410 aaKnown RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 FPR1P21462 350 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ARHGDIAP52565 204 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 CRYBA2P53672 197 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 DSTNP60981 165 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 SELENOWP63302 87 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TUBA4AP68366 448 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 KCNJ10P78508 379 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 CDK6Q00534 326 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 DUSP2Q05923 314 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 FUT7Q11130 342 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 EXOSC7Q15024 291 aaKnown RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ZNF791Q3KP31 576 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 IQCCQ4KMZ1 466 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 PRAMEF20Q5VT98 475 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 FOXB2Q5VYV0 432 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TTC23Q5W5X9 447 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 LYPD8Q6UX82 237 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TMEM179BQ7Z7N9 219 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TAGAPQ8N103 731 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 SLC15A4Q8N697 577 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ZNF615Q8N8J6 731 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TSPAN14Q8NG11 270 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 EXOSC8Q96B26 276 aaKnown RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 C7orf34Q96L11 122 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 FAM173AQ9BQD7 235 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TTTY12Q9BZ98 90 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 A4GALTQ9NPC4 353 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 SIRT3Q9NTG7 399 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ALKBH4Q9NXW9 302 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TUBA8Q9NY65 449 aaPredicted RBP11.34□□□□□ -0.59
SHMT2-230ENST00000557427 ABCG2Q9UNQ0 655 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 KIAA1549Q9HCM3 1950 aa11.34□□□□□ -0.59
SHMT2-230ENST00000557427 TRIM64CA6NLI5 447 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 TMEM229AB2RXF0 380 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 AQP7O14520 342 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 CNOT4O95628 575 aaKnown RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 GNAO1P09471 354 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 NID1P14543 1247 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 S1PR1P21453 382 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 NTSP30990 170 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 MAGEA5P43359 124 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 RAD23AP54725 363 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 NR1H2P55055 460 aa11.33□□□□□ -0.6
SHMT2-230ENST00000557427 PCBP3P57721 371 aaKnown RBP11.33□□□□□ -0.6
SHMT2-230ENST00000557427 VLDLRP98155 873 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms