RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 CCSO14618 274 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 FADS1O60427 444 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 AIFM1O95831 613 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TSPAN12O95859 305 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SLC6A9P48067 706 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PRLHRP49683 370 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PRMT2P55345 433 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 MCCD1P59942 119 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ARFRP1Q13795 201 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 DUSP7Q16829 419 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 SPIN3Q5JUX0 258 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CD276Q5ZPR3 534 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 KIAA1211LQ6NV74 962 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ESPNLQ6ZVH7 1005 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 GRASPQ7Z6J2 395 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TECPR1Q7Z6L1 1165 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ABI3BPQ7Z7G0 1075 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CBARPQ8N350 705 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 RASGEF1AQ8N9B8 481 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TP53I13Q8NBR0 393 aaPredicted RBP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 TMIEQ8NEW7 156 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 OR10K1Q8NGX5 313 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 UPRTQ96BW1 309 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 CXorf58Q96LI9 332 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF649Q9BS31 505 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 KATNB1Q9BVA0 655 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 C1QTNF3Q9BXJ4 246 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 NRIP3Q9NQ35 241 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.66□□□□□ -1.66
SYNE2-223ENST00000557005 PLCXD1Q9NUJ7 323 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 BACE2Q9Y5Z0 518 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 KIAA1217Q5T5P2 1943 aa4.66□□□□□ -1.66
SYNE2-223ENST00000557005 A0A0G2JMZ2 1700 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 LRRC37A2A6NM11 1700 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 MYO16Q9Y6X6 1858 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 THSD7AQ9UPZ6 1657 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 MAGEB4O15481 346 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 LCMT2O60294 686 aaKnown RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 GMDSO60547 372 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SRPX2O60687 465 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 PRSS23O95084 383 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 HMGN2P05204 90 aaKnown RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 INHBBP09529 407 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 AMY2BP19961 511 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ZP3P21754 424 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 AGTR1P30556 359 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 CCKBRP32239 447 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 NUDT1P36639 197 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ZFP36L2P47974 494 aaKnown RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 VAMP2P63027 116 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 DEFB134Q4QY38 66 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SSX6Q7RTT6 188 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 TRAPPC6BQ86SZ2 158 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 CAMKVQ8NCB2 501 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 FIBINQ8TAL6 211 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SLC7A13Q8TCU3 470 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 DUSP19Q8WTR2 217 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SCARB1Q8WTV0 552 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 MAFIPQ8WZ33 124 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 GCDHQ92947 438 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ZNF514Q96K75 400 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 PITX2Q99697 317 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SEMA4CQ9C0C4 833 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 TMEM38AQ9H6F2 299 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 MTHFD2LQ9H903 347 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 FBXL12Q9NXK8 326 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 REV1Q9UBZ9 1251 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SGK494L7N484 410 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 CASC3O15234 703 aaKnown RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 TGM5O43548 720 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 APOC1P02654 83 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SNRNP70P08621 437 aaKnown RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ACHEP22303 614 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 CHATP28329 748 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 VASPP50552 380 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 TSPAN31Q12999 210 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ALG10BQ5I7T1 473 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 C1orf189Q5VU69 101 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 FAM71E1Q6IPT2 247 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 LIPIQ6XZB0 460 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 OR52R1Q8NGF1 315 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 ARL11Q969Q4 196 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 FAM46BQ96A09 425 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 BPIFA2Q96DR5 249 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 DDOQ99489 341 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 RNF208Q9H0X6 261 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 EVA1BQ9NVM1 165 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 SPATA6Q9NWH7 488 aaPredicted RBP4.65□□□□□ -1.66
SYNE2-223ENST00000557005 HCFC1R1Q9NWW0 138 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 CLEC4EQ9ULY5 219 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 TRAPPC4Q9Y296 219 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 A3GALT2U3KPV4 340 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 V9GY05 133 aa4.65□□□□□ -1.66
SYNE2-223ENST00000557005 FOXE1O00358 373 aaPredicted RBP4.65□□□□□ -1.67
SYNE2-223ENST00000557005 CLDN4O14493 209 aa4.65□□□□□ -1.67
SYNE2-223ENST00000557005 TOR1AO14656 332 aa4.65□□□□□ -1.67
SYNE2-223ENST00000557005 SURF4O15260 269 aa4.65□□□□□ -1.67
SYNE2-223ENST00000557005 LATS1O95835 1130 aa4.65□□□□□ -1.67
SYNE2-223ENST00000557005 PEX11BO96011 259 aa4.65□□□□□ -1.67
SYNE2-223ENST00000557005 SOD1P00441 154 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms