RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TIGD6Q17RP2 521 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF385CQ66K41 422 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 PLAG1Q6DJT9 500 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF613Q6PF04 617 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 LRRC17Q8N6Y2 441 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 DAZLQ92904 295 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 MED31Q9Y3C7 131 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 CDH10Q9Y6N8 788 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 COL27A1Q8IZC6 1860 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 KHNYNO15037 678 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 YKT6O15498 198 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 HPGDP15428 266 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 DCDP81605 110 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 PRKCDQ05655 676 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 CRYZQ08257 329 aaKnown RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 PGGHGQ32M88 737 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 FNDC7Q5VTL7 733 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 YOD1Q5VVQ6 348 aaPredicted RBP11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 ANKRD37Q7Z713 158 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 MARCH3Q86UD3 253 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 FAM26EQ8N5C1 309 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 OR14A16Q8NHC5 309 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 TMEM163Q8TC26 289 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 RAB2BQ8WUD1 216 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 UBQLN3Q9H347 655 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 RNF167Q9H6Y7 350 aa11.69□□□□□ -0.54
VIPAS39-206ENST00000553888 CPAMD8Q8IZJ3 1885 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 PMS2P1A4D2B8 440 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 EFCAB10A6NFE3 127 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 SURF4O15260 269 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 MST1P26927 711 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 GPR143P51810 404 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 BPIFB3P59826 476 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 TAGLNQ01995 201 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 OCLNQ16625 522 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 HLA-DQA1Q5Y7H0 255 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 IGFN1Q86VF2 1251 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC34A3Q8N130 599 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 PLPP5Q8NEB5 264 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 TRUB1Q8WWH5 349 aaKnown RBP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 ZBTB20Q9HC78 741 aaPredicted RBP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 UBQLN4Q9NRR5 601 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 RXFP3Q9NSD7 469 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 COPS7AQ9UBW8 275 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 LNP1A1A4G5 178 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 NTN3O00634 580 aaPredicted RBP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 SYPP08247 313 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 ABCD3P28288 659 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 CSTF2P33240 577 aaKnown RBP eCLIP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 HOXD12P35452 270 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 BIKQ13323 160 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 CLPPQ16740 277 aaPredicted RBP11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 P2RY8Q86VZ1 359 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 OSTF1Q92882 214 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 OMA1Q96E52 524 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 TNFRSF13CQ96RJ3 184 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 HCAR1Q9BXC0 346 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 TRIM2Q9C040 744 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 RPS6KB2Q9UBS0 482 aa11.68□□□□□ -0.54
VIPAS39-206ENST00000553888 IGLV3-12A0A075B6K2 115 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 C2orf72A6NCS6 295 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 TRIM64BA6NI03 449 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SCDO00767 359 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SOCS6O14544 535 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SOX30O94993 753 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GADD45AP24522 165 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 IL12BP29460 328 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 CD79BP40259 229 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 PLCXD2Q0VAA5 305 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SKP2Q13309 424 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 TOMM34Q15785 309 aaPredicted RBP11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 ZNF550Q7Z398 422 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 MRGPREQ86SM8 312 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 LSMEM1Q8N8F7 131 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 APCDD1LQ8NCL9 501 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 OR52I1Q8NGK6 324 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 C3orf49Q96BT1 292 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 HS6ST2Q96MM7 605 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SPSB2Q99619 263 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 TGIF2Q9GZN2 237 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 C14orf105Q9NVL8 296 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 CNOT2Q9NZN8 540 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SIGLEC7Q9Y286 467 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 FAM86C2PA6NEL3 165 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 EFCAB9A8MZ26 197 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 MEN1O00255 615 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 ALOX12BO75342 701 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GABARAPO95166 117 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GUSBP08236 651 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 UBL4AP11441 157 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 ENDOUP21128 410 aaKnown RBP11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 AVPR2P30518 371 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 GAS1P54826 345 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 FHL1Q13642 323 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 ARMCX4Q5H9R4 360 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 POMZP3Q6PJE2 187 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SLC29A4Q7RTT9 530 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 OR2T33Q8NG76 320 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 SVIPQ8NHG7 77 aa11.67□□□□□ -0.54
VIPAS39-206ENST00000553888 LGALS12Q96DT0 336 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms