RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 OR52K2Q8NGK3 314 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 GIPC3Q8TF64 312 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HSD17B8Q92506 261 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 HIST1H2ACQ93077 130 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 BPIFA2Q96DR5 249 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 DTNBP1Q96EV8 351 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SMARCD1Q96GM5 515 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 C4orf45Q96LM5 186 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 FCRL4Q96PJ5 515 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 PSD2Q9BQI7 771 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CBWD1Q9BRT8 395 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ULBP3Q9BZM4 244 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 OR2B2Q9GZK3 357 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 LAT2Q9GZY6 243 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZSCAN16Q9H4T2 348 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZDHHC6Q9H6R6 413 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 SUDS3Q9H7L9 328 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 VIPAS39Q9H9C1 493 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 UBE2TQ9NPD8 197 aaPredicted RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 FBXO8Q9NRD0 319 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ATAD3AQ9NVI7 634 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 CNOT2Q9NZN8 540 aaKnown RBP3.33□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF319Q9P2F9 582 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 EXTL2Q9UBQ6 330 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 PSORS1C1Q9UIG5 152 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 STOML2Q9UJZ1 356 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 BTRCQ9Y297 605 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 OR1A2Q9Y585 309 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 FADS3Q9Y5Q0 445 aa3.33□□□□□ -1.88
LIMA1-208ENST00000551691 MYH11P35749 1972 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 PIKFYVEQ9Y2I7 2098 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SONP18583 2426 aaKnown RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 IGHV1OR21-1A0A087WYE8 117 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 A0A0U1RRA0 63 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CTAGE9A4FU28 777 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ASPDHA6ND91 283 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CCL24O00175 119 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 NUDT21O43809 227 aaKnown RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 XPNPEP2O43895 674 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CTSVO60911 334 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CTDNEP1O95476 244 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 TNFP01375 233 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ATP1B1P05026 303 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 APRTP07741 180 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 LYNP07948 512 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ACAA1P09110 424 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ALPIP09923 528 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 HLA-DOBP13765 273 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 RPS2P15880 293 aaKnown RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 EFNA1P20827 205 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 NR2C2P49116 596 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 FUT6P51993 359 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 YWHAGP61981 247 aaKnown RBP eCLIP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ZBTB17Q13105 803 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 TRAF3Q13114 568 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 FHL1Q13642 323 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SQLEQ14534 574 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF235Q14590 738 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 HERC3Q15034 1050 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SPHARQ15513 63 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SLC36A3Q495N2 470 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 PMF1Q6P1K2 205 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF549Q6P9A3 640 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 FCRLAQ7L513 359 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 COX8CQ7Z4L0 72 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 LUZP1Q86V48 1076 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CCDC185Q8N715 623 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 TCEANCQ8N8B7 351 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF383Q8NA42 475 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SLC37A3Q8NCC5 494 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CATSPER1Q8NEC5 780 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 CCDC112Q8NEF3 446 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 OR6C4Q8NGE1 309 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 OR2A12Q8NGT7 310 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 OR1E3Q8WZA6 343 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 PIK3R3Q92569 461 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 RAB39BQ96DA2 213 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SLC47A1Q96FL8 570 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 PDXPQ96GD0 296 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ANKRD36BP1Q96IX9 119 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 KRT12Q99456 494 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 GSDMCQ9BYG8 508 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 SDR39U1Q9NRG7 319 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 AGPAT4Q9NRZ5 378 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 ZNF701Q9NV72 531 aaPredicted RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 GPR83Q9NYM4 423 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 OR6C2Q9NZP2 312 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 IL20RAQ9UHF4 553 aa3.32□□□□□ -1.88
LIMA1-208ENST00000551691 PRKDCP78527 4128 aaKnown RBP3.32□□□□□ -1.88
LIMA1-208ENST00000551691 MGAM2Q2M2H8 2515 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 HIVEP2P31629 2446 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 EPPK1P58107 5090 aaKnown RBP3.31□□□□□ -1.88
LIMA1-208ENST00000551691 IGHV4OR15-8A0A075B7B6 117 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 C15orf38-AP3S2A0A0A6YYH1 394 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 A0A1B0GWJ7 208 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 TMEM89A2RUT3 159 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 TMCO5BA8MYB1 307 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 UBXN8O00124 270 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 SNAP91O60641 907 aa3.31□□□□□ -1.88
LIMA1-208ENST00000551691 SPAG6O75602 509 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms