RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 ITGA3P26006 1051 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 WNT3P56703 355 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 KLHDC8BQ8IXV7 354 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 AMER3Q8N944 861 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 OR7G2Q8NG99 324 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 GRPEL2Q8TAA5 225 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 CASTOR1Q8WTX7 329 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 CNRIP1Q96F85 164 aaPredicted RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 SIRT5Q9NXA8 310 aa15.15■□□□□ 0.02
CUX1-213ENST00000549414 RPH3AQ9Y2J0 694 aaPredicted RBP15.15■□□□□ 0.02
CUX1-213ENST00000549414 PARP14Q460N5 1801 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 A6NL46 340 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 VSTM2BA6NLU5 285 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 GTF2F2P13984 249 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 SLX4IPQ5VYV7 408 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 FOXRED2Q8IWF2 684 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 IL17RCQ8NAC3 791 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 SYNPO2LQ9H987 977 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 EPHA6Q9UF33 1036 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 BCAT2O15382 392 aaPredicted RBP15.14■□□□□ 0.01
CUX1-213ENST00000549414 SEC14L5O43304 696 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 AQP9O43315 295 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 CISD3P0C7P0 127 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 MAN2A2P49641 1150 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 RAB38P57729 211 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 BCL2L15Q5TBC7 163 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 PRAMEF17Q5VTA0 474 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 ZNF547Q8IVP9 402 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 EID2Q8N6I1 236 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 DUSP21Q9H596 190 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 RNF121Q9H920 327 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 CHMP1AQ9HD42 196 aaPredicted RBP15.14■□□□□ 0.01
CUX1-213ENST00000549414 CUTCQ9NTM9 273 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 A6NCN8 305 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 LYRM1O43325 122 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 CSO75390 466 aaKnown RBP15.14■□□□□ 0.01
CUX1-213ENST00000549414 RBBP9O75884 186 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 RASSF6Q6ZTQ3 369 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 PNLDC1Q8NA58 520 aaKnown RBP15.14■□□□□ 0.01
CUX1-213ENST00000549414 SLC35A4Q96G79 324 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 FOXQ1Q9C009 403 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 HOXD1Q9GZZ0 328 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 ARID2Q68CP9 1835 aa15.14■□□□□ 0.01
CUX1-213ENST00000549414 TP53I11O14683 189 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 FGF17O60258 216 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RBMS1P29558 406 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 ZNF81P51508 661 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RAE1P78406 368 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 MESP2Q0VG99 397 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 CALHM3Q86XJ0 350 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 KATNB1Q9BVA0 655 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 ZNF304Q9HCX3 659 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 SLC35A3Q9Y2D2 325 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 ZNF878C9JN71 531 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 LDOC1O95751 146 aaPredicted RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 PLATP00750 562 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 CD3GP09693 182 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RPS5P46782 204 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 GLT8D1Q68CQ7 371 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 MBOAT2Q6ZWT7 520 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 GDPD1Q8N9F7 314 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 OR52I1Q8NGK6 324 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RSPRY1Q96DX4 576 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 PLA2G2FQ9BZM2 168 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 UBE2ZQ9H832 354 aaPredicted RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 TRPV4Q9HBA0 871 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 CD93Q9NPY3 652 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 KLHL21Q9UJP4 597 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 FBXL3Q9UKT7 428 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 NOP16Q9Y3C1 178 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 TNS1Q9HBL0 1735 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 KCNE1BA0A087WTH5 132 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 ST6GAL1P15907 406 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 TEAD1P28347 426 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RIDAP52758 137 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 EMP2P54851 167 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 PRPS1P60891 318 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 STEAP3Q658P3 488 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 NRARPQ7Z6K4 114 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 RBM12BQ8IXT5 1001 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 OR5AK2Q8NH90 309 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 FKBP10Q96AY3 582 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 UBQLN3Q9H347 655 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 FN3KQ9H479 309 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 CCDC59Q9P031 241 aaKnown RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 GABRPO00591 440 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 SRPX2O60687 465 aaPredicted RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 LGI1O95970 557 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 LRRC37A5PQ49AS3 106 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 XKRXQ6PP77 449 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 C10orf111Q8N326 155 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 AKAP1Q92667 903 aaKnown RBP eCLIP15.13■□□□□ 0.01
CUX1-213ENST00000549414 UBQLN4Q9NRR5 601 aa15.13■□□□□ 0.01
CUX1-213ENST00000549414 TMEFF2Q9UIK5 374 aaPredicted RBP15.13■□□□□ 0.01
CUX1-213ENST00000549414 ALPK2Q86TB3 2170 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 IL33O95760 270 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 HOXB3P14651 431 aaPredicted RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 IDUAP35475 653 aa15.12■□□□□ 0.01
CUX1-213ENST00000549414 HTRA4P83105 476 aaPredicted RBP15.12■□□□□ 0.01
CUX1-213ENST00000549414 TLE3Q04726 772 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms