RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ARSGQ96EG1 525 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 MVB12AQ96EY5 273 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 TIMP4Q99727 224 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 LRIT1Q9P2V4 623 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 PRODH2Q9UF12 536 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 IGHV1OR21-1A0A087WYE8 117 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 RHPN2P1A8MT19 583 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 NUDT21O43809 227 aaKnown RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 SDC3O75056 442 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SLC2A5P22732 501 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 BDH1Q02338 343 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 CDC20Q12834 499 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 KLHL26Q53HC5 615 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 PLBD1Q6P4A8 553 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 KIRREL2Q6UWL6 708 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 LHFPL3Q86UP9 236 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 KLHL36Q8N4N3 616 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 ARIH2OSQ8N7S6 290 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 PTP4A1Q93096 173 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 OR1F2PQ96R84 312 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SDHCQ99643 169 aaPredicted RBP12.68□□□□□ -0.38
RTN3-210ENST00000540798 HCAR1Q9BXC0 346 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 MCCC2Q9HCC0 563 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 CUTCQ9NTM9 273 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 ICAM5Q9UMF0 924 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 TRAPPC4Q9Y296 219 aa12.68□□□□□ -0.38
RTN3-210ENST00000540798 SERINC4A6NH21 518 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 FAM183AA6NL82 134 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 CTDSP2O14595 271 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 GIMD1P0DJR0 217 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 IL9P15248 144 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 ADH7P40394 386 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 RFX3P48380 749 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 CSNK1EP49674 416 aaKnown RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 ALG10BQ5I7T1 473 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 VASNQ6EMK4 673 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 KCNS3Q9BQ31 491 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 SP140LQ9H930 580 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 GMEB2Q9UKD1 530 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 YARS2Q9Y2Z4 477 aaKnown RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 MN1Q10571 1320 aaPredicted RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 PNMA8CA0A1B0GUJ8 204 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 TRDV1A0A1B0GX56 115 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 K7ESF4 209 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 SLC37A1P57057 533 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 COPZ1P61923 177 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 KCNAB1Q14722 419 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 STEAP3Q658P3 488 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 ZNF322Q6U7Q0 402 aaPredicted RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 OR4C3Q8NH37 302 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 SECISBP2Q96T21 854 aaKnown RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 H2AFY2Q9P0M6 372 aaPredicted RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 TNFRSF10DQ9UBN6 386 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 CAB39Q9Y376 341 aaPredicted RBP12.67□□□□□ -0.38
RTN3-210ENST00000540798 PCDHGB6Q9Y5F9 930 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 KNL1Q8NG31 2342 aa12.67□□□□□ -0.38
RTN3-210ENST00000540798 TRAV27A0A087WT01 109 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC30A4O14863 429 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 S100A1P23297 94 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 PGDP52209 483 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 OR1D5P58170 312 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 HSD11B2P80365 405 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 FABP5Q01469 135 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 D2HGDHQ8N465 521 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 ZNF614Q8N883 585 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 COQ7Q99807 217 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 DUSP15Q9H1R2 295 aaPredicted RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 ERVMER34-1Q9H9K5 563 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SERTAD3Q9UJW9 196 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 ITGB1BP2Q9UKP3 347 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC35A3Q9Y2D2 325 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 ABCA7Q8IZY2 2146 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 FAM86C2PA6NEL3 165 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 LOC110117498-PIK3R3F6TDL0 507 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SAGP10523 405 aaPredicted RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 GALP22466 123 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 TNFSF8P32971 234 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 PSPHP78330 225 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 C22orf42Q6IC83 251 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC37A3Q8NCC5 494 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 FAM83FQ8NEG4 500 aaPredicted RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 ASB15Q8WXK1 588 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 KCTD7Q96MP8 289 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 IFT27Q9BW83 186 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 MED20Q9H944 212 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SNTG1Q9NSN8 517 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 PLEKHB1Q9UF11 243 aaPredicted RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 A0A087WUJ7 227 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 NOTOA8MTQ0 251 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 C17orf105B2RV13 164 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 LRRTM2O43300 516 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 AKAP8O43823 692 aaKnown RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 CDRT1O95170 752 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 RTL4Q6ZR62 310 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC22A16Q86VW1 577 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 ZNF440Q8IYI8 595 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC25A45Q8N413 288 aa12.66□□□□□ -0.38
RTN3-210ENST00000540798 SPRYD4Q8WW59 207 aaPredicted RBP12.66□□□□□ -0.38
RTN3-210ENST00000540798 SLC41A2Q96JW4 573 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms