RNA–Protein interactions for RNA: ENST00000540475.5

SEMA4D-223, Transcript of semaphorin 4D, human

TSL 3

Gene SEMA4D, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEMA4D-223	ENST00000540475	NUFIP2	Q7Z417	695 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	BIVM	Q86UB2	503 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TUSC5	Q8IXB3	177 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	STEAP2	Q8NFT2	490 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TMEM234	Q8WY98	164 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZNF75CP	Q92670	426 aa	Predicted RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ROPN1L	Q96C74	230 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	REXO5	Q96IC2	774 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	C18orf12	Q96KH6	178 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	TEX37	Q96LM6	180 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PPP1R36	Q96LQ0	422 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	USB1	Q9BQ65	265 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PSD2	Q9BQI7	771 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	THUMPD3	Q9BV44	507 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ACTR6	Q9GZN1	396 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	EXOSC3	Q9NQT5	275 aa	Known RBP	11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SLC35A3	Q9Y2D2	325 aa		11.66	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZNF724	A8MTY0	619 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZNF814	B7Z6K7	855 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475		E9PBE3	544 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ARHGEF9	O43307	516 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SMPD2	O60906	423 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	H6PD	O95479	791 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	OR12D1	P0DN82	309 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PGC	P20142	388 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ENPP1	P22413	925 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	FKBP2	P26885	142 aa	Known RBP	11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	RNF144A	P50876	292 aa	Predicted RBP	11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PLAUR	Q03405	335 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	LRRC74A	Q0VAA2	488 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	P2RY6	Q15077	328 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SFRP5	Q5T4F7	317 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PPP4R4	Q6NUP7	873 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ADAM5	Q6NVV9	412 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	C3orf33	Q6P1S2	294 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	FRRS1	Q6ZNA5	592 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PLEKHM3	Q6ZWE6	761 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	C16orf62	Q7Z3J2	963 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	SPATA19	Q7Z5L4	167 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ANKRD46	Q86W74	232 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZNF619	Q8N2I2	560 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ARL8A	Q96BM9	186 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZG16B	Q96DA0	208 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	ZC3HAV1L	Q96H79	300 aa	Known RBP	11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GSX2	Q9BZM3	304 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GSX1	Q9H4S2	264 aa	Predicted RBP	11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	C12orf49	Q9H741	205 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	KCNK9	Q9NPC2	374 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	AIG1	Q9NVV5	245 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	THAP1	Q9NVV9	213 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	KLHL9	Q9P2J3	617 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	PRDM4	Q9UKN5	801 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	WDR45	Q9Y484	360 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	GPR45	Q9Y5Y3	372 aa		11.65	□□□□□ -0.54
SEMA4D-223	ENST00000540475	IGKV3D-15	A0A087WSY6	115 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475		A0A1W2PNR3	127 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	HMGN4	O00479	90 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	SMAD9	O15198	467 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	HDAC3	O15379	428 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CNOT4	O95628	575 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CPSF4	O95639	269 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CSTA	P01040	98 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	C1QC	P02747	245 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	IL12A	P29459	219 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	S100A3	P33764	101 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	APOBEC1	P41238	236 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	MAGEA8	P43361	318 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	OR3A2	P47893	321 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CLK1	P49759	484 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	UFM1	P61960	85 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	PDK3	Q15120	406 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	FAM174B	Q3ZCQ3	159 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	ATAD3B	Q5T9A4	648 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	SEZ6L2	Q6UXD5	910 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	TMPPE	Q6ZT21	453 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	OLIG3	Q7RTU3	272 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	ZNF611	Q8N823	705 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	ZNF614	Q8N883	585 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	RAB3IL1	Q8TBN0	382 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	SLC25A43	Q8WUT9	341 aa	Predicted RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	XAGE5	Q8WWM1	108 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	HSD17B8	Q92506	261 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	PMM1	Q92871	262 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	RAB8B	Q92930	207 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	MAEL	Q96JY0	434 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	TRNT1	Q96Q11	434 aa	Known RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CCDC106	Q9BWC9	280 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	UBTD1	Q9HAC8	227 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	ZNF701	Q9NV72	531 aa	Predicted RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	MARCO	Q9UEW3	520 aa	Predicted RBP	11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	LIPT1	Q9Y234	373 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	NAV3	Q8IVL0	2385 aa		11.64	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CAD	P27708	2225 aa		11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	CCDC154	A6NI56	674 aa		11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	SLCO1B7	G3V0H7	640 aa		11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	FAAH	O00519	579 aa		11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	DNPH1	O43598	174 aa		11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	BCAS1	O75363	584 aa	Predicted RBP	11.63	□□□□□ -0.55
SEMA4D-223	ENST00000540475	PGR	P06401	933 aa		11.63	□□□□□ -0.55

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