RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CCNJQ5T5M9 372 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 C1orf146Q5VVC0 180 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 GLYATQ6IB77 296 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 NPSR1Q6W5P4 371 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 NET1Q7Z628 596 aaPredicted RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 GALNT10Q86SR1 603 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 DHFR2Q86XF0 187 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CALHM3Q86XJ0 350 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 PTOV1Q86YD1 416 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 PRR22Q8IZ63 422 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 C10orf111Q8N326 155 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 ANKFN1Q8N957 763 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC38A5Q8WUX1 472 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 ASB15Q8WXK1 588 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 TMBIM1Q969X1 311 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 PERPQ96FX8 193 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 TRNT1Q96Q11 434 aaKnown RBP11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF607Q96SK3 696 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 SPATA5L1Q9BVQ7 753 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 LDAHQ9H6V9 325 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 CD300AQ9UGN4 299 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 USP22Q9UPT9 525 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 KCNE3Q9Y6H6 103 aa11.3□□□□□ -0.6
CLSTN3-208ENST00000538933 MED12LQ86YW9 2145 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 A0A0G2JPF8 293 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 AHRRA9YTQ3 701 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 HNRNPCL2B2RXH8 293 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 HNRNPCL3B7ZW38 293 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 ANKRD65E5RJM6 399 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 H0YHG0 523 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SIAH2O43255 324 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SERPINB7O75635 380 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 KCNK2O95069 426 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 H6PDO95479 791 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 TFPTP0C1Z6 253 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 HNRNPCL4P0DMR1 293 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 NCK1P16333 377 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 PIGAP37287 484 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 VEZF1Q14119 521 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 FLOT2Q14254 428 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 RPS26P11Q5JNZ5 115 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 HEPHL1Q6MZM0 1159 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 OPN5Q6U736 354 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 LRRC74BQ6ZQY2 392 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 RTL4Q6ZR62 310 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 PATL1Q86TB9 770 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF619Q8N2I2 560 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF614Q8N883 585 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 GOLM1Q8NBJ4 401 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 OR4N2Q8NGD1 307 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SPPL2AQ8TCT8 520 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 IGFBPL1Q8WX77 278 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 HOXB13Q92826 284 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 EFHD2Q96C19 240 aaPredicted RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 ASB9Q96DX5 294 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 OMA1Q96E52 524 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 NSMCE2Q96MF7 247 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SECISBP2Q96T21 854 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SDF2Q99470 211 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 PCDHAC1Q9H158 963 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 ACKR4Q9NPB9 350 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 POLE3Q9NRF9 147 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 GMPR2Q9P2T1 348 aaKnown RBP11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SVEP1Q4LDE5 3571 aa11.29□□□□□ -0.6
CLSTN3-208ENST00000538933 SH3D21A4FU49 640 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ARPC2O15144 300 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 TO15178 435 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 CHRM4P08173 479 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 CCL3P10147 92 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 GGT1P19440 569 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ABCD3P28288 659 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 MAP3K8P41279 467 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 CLK3P49761 638 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 GZMMP51124 257 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 AGFG1P52594 562 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 RPP38P78345 283 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 TRAP1Q12931 704 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 EFR3AQ14156 821 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ADRM1Q16186 407 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ACKR1Q16570 336 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 EXOSC6Q5RKV6 272 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 PRAMEF8Q5VWM4 474 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 PRAMEF7Q5VXH5 474 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 CYP2R1Q6VVX0 501 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 HIPK1Q86Z02 1210 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 LACC1Q8IV20 430 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 PEX5LQ8IYB4 626 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC15A4Q8N697 577 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF441Q8N8Z8 693 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 FAM13CQ8NE31 585 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 NEIL3Q8TAT5 605 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SGCZQ96LD1 299 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 COL21A1Q96P44 957 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ADOQ96SZ5 270 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 GSX2Q9BZM3 304 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ZNF703Q9H7S9 590 aaPredicted RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SH2D2AQ9NP31 389 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SACM1LQ9NTJ5 587 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 RYDENQ9NUL5 291 aaKnown RBP11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 ADPRHL2Q9NX46 363 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms