RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GHITMQ9H3K2 345 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 GAREM1Q9H706 876 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 PDFQ9HBH1 243 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 KRCC1Q9NPI7 259 aaPredicted RBP6.12□□□□□ -1.43
USP28-202ENST00000535607 MRPL17Q9NRX2 175 aaKnown RBP6.12□□□□□ -1.43
USP28-202ENST00000535607 CYSLTR2Q9NS75 346 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 IMP3Q9NV31 184 aaKnown RBP6.12□□□□□ -1.43
USP28-202ENST00000535607 ELOVL2Q9NXB9 296 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 DNAJC27Q9NZQ0 273 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 CPNE7Q9UBL6 633 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 GMEB2Q9UKD1 530 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 LAMA3Q16787 3333 aa6.12□□□□□ -1.43
USP28-202ENST00000535607 PLXNA4Q9HCM2 1894 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 KCNE1BA0A087WTH5 132 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TRAV19A0A0A6YYK7 116 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 GNG14A0A1W2PPG7 69 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 RPS10-NUDT3A0A1W2PQS6 291 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 A0A1W2PRB8 838 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 C1orf226A1L170 272 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TRAPPC13A5PLN9 417 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MFSD2BA6NFX1 497 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MPTX1A8MV57 137 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 HNRNPCL2B2RXH8 293 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 LRRN3E7EW58 273 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TEX46H3BTG2 121 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 AIPO00170 330 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 LEFTY2O00292 366 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 LRRTM2O43300 516 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TLX2O43763 284 aaPredicted RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 ATG13O75143 517 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 B3GALNT1O75752 331 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SCO1O75880 301 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 RGS11O94810 467 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SOD1P00441 154 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SERPINA3P01011 423 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PROS1P07225 676 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CA3P07451 260 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 RHOCP08134 193 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 HBQ1P09105 142 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 GIPP09681 153 aaPredicted RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 ACSM4P0C7M7 580 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 POU2F1P14859 743 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 ZNF250P15622 560 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NPR2P20594 1047 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TACR2P21452 398 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 UQCRC2P22695 453 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 AQP1P29972 269 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CALCRP30988 508 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NSG1P42857 185 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MTNR1AP48039 350 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TAS2R43P59537 309 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 AP1S1P61966 158 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TSPAN5P62079 268 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 DHODHQ02127 395 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 EFEMP1Q12805 493 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PLD1Q13393 1074 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 OPCMLQ14982 345 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 STK11Q15831 433 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NRN1LQ496H8 165 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 HIST2H2AA3Q6FI13 130 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 ARMC6Q6NXE6 501 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 KIAA1324Q6UXG2 1013 aaKnown RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 LINGO4Q6UY18 593 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CHST9Q7L1S5 443 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CHMP1BQ7LBR1 199 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 DGLUCYQ7Z3D6 616 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TMCO2Q7Z6W1 182 aaPredicted RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 SCD5Q86SK9 330 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SCN4BQ8IWT1 228 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 LAS2Q8IYD9 372 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PIANPQ8IYJ0 282 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 OR6V1Q8N148 313 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NAGSQ8N159 534 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 STPG2Q8N412 459 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 FTMTQ8N4E7 242 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MS4A15Q8N5U1 240 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SYT14Q8NB59 555 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 OR9Q2Q8NGE9 314 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 OR6M1Q8NGM8 313 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NFKBIDQ8NI38 313 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 ZNF461Q8TAF7 563 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CEP76Q8TAP6 659 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PPCDCQ96CD2 204 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CMTM3Q96MX0 182 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 SEPT5Q99719 369 aaPredicted RBP6.11□□□□□ -1.43
USP28-202ENST00000535607 PDCD10Q9BUL8 212 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 CACNG6Q9BXT2 260 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 PRO3102Q9H379 93 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 LRRN3Q9H3W5 708 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 OSGEPL1Q9H4B0 414 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 REEP4Q9H6H4 257 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 ASB8Q9H765 288 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 WASH6PQ9NQA3 447 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 NUDT15Q9NV35 164 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 MED17Q9NVC6 651 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TMLHEQ9NVH6 421 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 HPF1Q9NWY4 346 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TAS2R16Q9NYV7 291 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 TVP23BQ9NYZ1 205 aa6.11□□□□□ -1.43
USP28-202ENST00000535607 IL17CQ9P0M4 197 aa6.11□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms