RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 POLR1EQ9GZS1 481 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 POLR2J3Q9H1A7 115 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 RHOJQ9H4E5 214 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SMYD3Q9H7B4 428 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 RMND5AQ9H871 391 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 ELOVL3Q9HB03 270 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 IL17CQ9P0M4 197 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 SPRR3Q9UBC9 169 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 Q9UF83 564 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 BLOC1S6Q9UL45 172 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 MRPS33Q9Y291 106 aaKnown RBP1.98□□□□□ -2.09
CD44-238ENST00000534296 GSTK1Q9Y2Q3 226 aa1.98□□□□□ -2.09
CD44-238ENST00000534296 TTC21BQ7Z4L5 1316 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 IGHV2-70DA0A0C4DH43 119 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 MBLAC1A4D2B0 266 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 G3V4G9 280 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 XPO1O14980 1071 aaKnown RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 ZSCAN12O43309 604 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 MED7O43513 233 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 OR1F1O43749 312 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 MTX2O75431 263 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 KLF8O95600 359 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 GNA14O95837 355 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 F10P00742 488 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 OPN1LWP04000 364 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 GIG44P09565 113 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 POU2F1P14859 743 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 IMPDH1P20839 514 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 FGF9P31371 208 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 RPL13AP40429 203 aaKnown RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 TDO2P48775 406 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 RGS4P49798 205 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 PKNOX1P55347 436 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 EWSR1Q01844 656 aaKnown RBP eCLIP1.97□□□□□ -2.09
CD44-238ENST00000534296 ZNF45Q02386 682 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 CUL1Q13616 776 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 SELPLGQ14242 412 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 ELAVL3Q14576 367 aaKnown RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 MXD4Q14582 209 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 PDK3Q15120 406 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 AANATQ16613 207 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 C10orf120Q5SQS8 335 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 BEND3Q5T5X7 828 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 LCE3AQ5TA76 89 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 TTC23Q5W5X9 447 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 WSCD1Q658N2 575 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 PVRIGQ6DKI7 326 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 SLC25A24Q6NUK1 477 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 UFSP1Q6NVU6 142 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 PMF1Q6P1K2 205 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 WDR74Q6RFH5 385 aaPredicted RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 HSDL2Q6YN16 418 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 LCA5Q86VQ0 697 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 PPP1R27Q86WC6 154 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 ZNF677Q86XU0 584 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 VRK2Q86Y07 508 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 ZNF683Q8IZ20 524 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 LRRC43Q8N309 656 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 RNF175Q8N4F7 328 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 TMEM252Q8N6L7 170 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 ARL6IP6Q8N6S5 226 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 OR2AP1Q8NGE2 309 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 OR2A12Q8NGT7 310 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 DTNBP1Q96EV8 351 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 SEC22AQ96IW7 307 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 IL4I1Q96RQ9 567 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 CLCC1Q96S66 551 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 CYP2S1Q96SQ9 504 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 CCT7Q99832 543 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 SLC35A5Q9BS91 424 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 RAB33BQ9H082 229 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 IKZF5Q9H5V7 419 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 TREM2Q9NZC2 230 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 BFARQ9NZS9 450 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 WARS2Q9UGM6 360 aaKnown RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 TBK1Q9UHD2 729 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 LCMT1Q9UIC8 334 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 PHF11Q9UIL8 331 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 UBQLN1Q9UMX0 589 aaKnown RBP1.97□□□□□ -2.09
CD44-238ENST00000534296 ABCG2Q9UNQ0 655 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 N6AMT1Q9Y5N5 214 aa1.97□□□□□ -2.09
CD44-238ENST00000534296 ZNF646O15015 1829 aaPredicted RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 FRMPD4Q14CM0 1322 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 CLSPNQ9HAW4 1339 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 EPOPA6NHQ4 379 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 ABCD4O14678 606 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 ZNF264O43296 627 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 PRKYO43930 277 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 UGT1A9O60656 530 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 TSC22D2O75157 780 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 ECI2O75521 394 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 MMP23AO75900 390 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 SLITRK3O94933 977 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 P04436 131 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 IGF1P05019 195 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 CD1EP15812 388 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 DRD5P21918 477 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 HMGB2P26583 209 aaKnown RBP1.96□□□□□ -2.1
CD44-238ENST00000534296 HTR1FP30939 366 aa1.96□□□□□ -2.1
CD44-238ENST00000534296 KIR2DS2P43631 304 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms