RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 STOML1Q9UBI4 398 aa11.65□□□□□ -0.54
VPS28-216ENST00000533806 ABCA12Q86UK0 2595 aa11.65□□□□□ -0.55
VPS28-216ENST00000533806 CACNA1CQ13936 2221 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 NAV2Q8IVL1 2488 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 EIF1AYO14602 144 aaKnown RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 AP3D1O14617 1153 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 DVL2O14641 736 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 ANGPT2O15123 496 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 SLC22A2O15244 555 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 HNRNPRO43390 633 aaKnown RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 CYP7B1O75881 506 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 AQP8O94778 261 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 CRHP06850 196 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 ETS2P15036 469 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 IL7RP16871 459 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 DRD4P21917 467 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 BMP5P22003 454 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 OPRM1P35372 400 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 SLC6A8P48029 635 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 GZMMP51124 257 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 RPS3AP61247 264 aaKnown RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 EPS8Q12929 822 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 SELPLGQ14242 412 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 PON3Q15166 354 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 LIN52Q52LA3 116 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 GCNT6Q5T4J0 391 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 REEP3Q6NUK4 255 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 ZNF836Q6ZNA1 936 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 PLEKHM3Q6ZWE6 761 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 NET1Q7Z628 596 aaPredicted RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 PTOV1Q86YD1 416 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 ZNF295-AS1Q8N0V1 137 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 CLIP4Q8N3C7 705 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 BBS10Q8TAM1 723 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 SMPDL3BQ92485 455 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 INTS12Q96CB8 462 aaKnown RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 KLHL15Q96M94 604 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 SFXN3Q9BWM7 321 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 TRIM8Q9BZR9 551 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 TMEM185BQ9H7F4 350 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 KAT8Q9H7Z6 458 aaKnown RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 COQ10BQ9H8M1 238 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 PAQR5Q9NXK6 330 aaPredicted RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 CORO2BQ9UQ03 480 aa11.64□□□□□ -0.55
VPS28-216ENST00000533806 ZNF443Q9Y2A4 671 aaPredicted RBP11.64□□□□□ -0.55
VPS28-216ENST00000533806 ARHGAP21Q5T5U3 1957 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 A0A1W2PNV4 684 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 EVPLLA8MZ36 301 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 TNFSF11O14788 317 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 CXCL13O43927 109 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 GCM2O75603 506 aaPredicted RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 NPPAP01160 153 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 CGAP01215 116 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 PABPC4LP0CB38 370 aaKnown RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 PRF1P14222 555 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 ME2P23368 584 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 LSP1P33241 339 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 APOBEC1P41238 236 aaKnown RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 KIR2DL2P43627 348 aaPredicted RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 EIF1AXP47813 144 aaKnown RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 CCR4P51679 360 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 AGFG1P52594 562 aaKnown RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 GYS2P54840 703 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 PCBP3P57721 371 aaKnown RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 MTPNP58546 118 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 CDK6Q00534 326 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 SELENBP1Q13228 472 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 NFYCQ13952 458 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 ZSWIM7Q19AV6 140 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 TMEM176BQ3YBM2 270 aaPredicted RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 EEF1A1P5Q5VTE0 462 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 HBMQ6B0K9 141 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 OR2A2Q6IF42 318 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 NANOGP8Q6NSW7 305 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 CHMP1BQ7LBR1 199 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 ADGRG3Q86Y34 549 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 DMRTC2Q8IXT2 367 aaPredicted RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 GCNT2Q8N0V5 402 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 NFKBIDQ8NI38 313 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 TMEM234Q8WY98 164 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 OSTF1Q92882 214 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 STARD4Q96DR4 205 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 SPATA9Q9BWV2 254 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 ADAM19Q9H013 955 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 NANOGQ9H9S0 305 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 ARMCX1Q9P291 453 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.63□□□□□ -0.55
VPS28-216ENST00000533806 IFT52Q9Y366 437 aa11.63□□□□□ -0.55
VPS28-216ENST00000533806 LOC100653049A0A140TA62 436 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 TMEM247A6NEH6 219 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 CFAP73A6NFT4 308 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 BBIP1A8MTZ0 92 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 KRT34O76011 436 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 PRG2P13727 222 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 RYKP34925 604 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 SFTPDP35247 375 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 SLC1A3P43003 542 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 IDH2P48735 452 aaKnown RBP11.62□□□□□ -0.55
VPS28-216ENST00000533806 ASCL1P50553 236 aa11.62□□□□□ -0.55
VPS28-216ENST00000533806 CARD18P57730 90 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms