RNA–Protein interactions for RNA: ENST00000533492.1

CPSF1-211, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 510 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-211ENST00000533492 KLHL13Q9P2N7 655 aa13.77□□□□□ -0.21
CPSF1-211ENST00000533492 SLC35A3Q9Y2D2 325 aa13.77□□□□□ -0.21
CPSF1-211ENST00000533492 IGHV3-15A0A0B4J1V0 119 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 GOLGA8QA0A0J9YX86 632 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 CENPVL1A0A0U1RR11 272 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 GOLGA8OA6NCC3 632 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 CCDC154A6NI56 674 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 GOLGA8NF8WBI6 632 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 SLCO1B7G3V0H7 640 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 SMPD2O60906 423 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ERLIN1O75477 346 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 PGRP06401 933 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 THBDP07204 575 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 GUSBP08236 651 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ALDOCP09972 364 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 FOSL1P15407 271 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ENPP1P22413 925 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 EPHA3P29320 983 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ANXA11P50995 505 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 MERTKQ12866 999 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 MAPK14Q16539 360 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 SHEQ5VZ18 495 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 NXNQ6DKJ4 435 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 TYW3Q6IPR3 259 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ALKBH2Q6NS38 261 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF621Q6ZSS3 439 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 NUFIP2Q7Z417 695 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 WFDC8Q8IUA0 241 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 P3H2Q8IVL5 708 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF619Q8N2I2 560 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 WFDC11Q8NEX6 87 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 STEAP2Q8NFT2 490 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ZNF524Q96C55 264 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 TEX37Q96LM6 180 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 CCDC115Q96NT0 180 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 HS3ST6Q96QI5 342 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 PIP5K1AQ99755 562 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 TACO1Q9BSH4 297 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 HDHD5Q9BXW7 423 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 QRSL1Q9H0R6 528 aaKnown RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 OR10A4Q9H209 315 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 WDR55Q9H6Y2 383 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ACER3Q9NUN7 267 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 KLHL9Q9P2J3 617 aa13.76□□□□□ -0.21
CPSF1-211ENST00000533492 ACANP16112 2415 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 ETV2O00321 342 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 KIAA0513O60268 411 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 DNAJA2O60884 412 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 NID1P14543 1247 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 PSMB1P20618 241 aaKnown RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 HOXC12P31275 282 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 RYKP34925 604 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 PGM1P36871 562 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 NR1H2P55055 460 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 MAGOHP61326 146 aaKnown RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 LRRC74AQ0VAA2 488 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 RASGEF1BQ0VAM2 473 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 FRRS1Q6ZNA5 592 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 C20orf204Q6ZNR8 217 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 CXorf67Q86X51 503 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 RNF130Q86XS8 419 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 MARK4Q96L34 752 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 CCL19Q99731 98 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 SAP130Q9H0E3 1048 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 MANSC1Q9H8J5 431 aa13.75□□□□□ -0.21
CPSF1-211ENST00000533492 SPIN1Q9Y657 262 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-211ENST00000533492 ARID1AO14497 2285 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 C9JVG2 144 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 SULT2B1O00204 365 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 KLF4O43474 513 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 SNNO75324 88 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 H6PDO95479 791 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 TFPIP10646 304 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 IL32P24001 234 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 IL12AP29459 219 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 APOBEC1P41238 236 aaKnown RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 SLC18A1P54219 525 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 CSNK2A1P68400 391 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 KCNJ10P78508 379 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 TXNL4AP83876 142 aaKnown RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 CHRNEQ04844 493 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 TFAP2EQ6VUC0 442 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 TMPPEQ6ZT21 453 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 PLEKHM3Q6ZWE6 761 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 HMGN2P46Q86SG4 172 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 ARFGAP2Q8N6H7 521 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 GLB1L3Q8NCI6 653 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 RAB3IL1Q8TBN0 382 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 SLC25A43Q8WUT9 341 aaPredicted RBP13.74□□□□□ -0.21
CPSF1-211ENST00000533492 ZG16BQ96DA0 208 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 PLPPR2Q96GM1 343 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 INPP5KQ9BT40 448 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 LIPT1Q9Y234 373 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 GPR45Q9Y5Y3 372 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 DSCAMO60469 2012 aa13.74□□□□□ -0.21
CPSF1-211ENST00000533492 HMGN4O00479 90 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 SLC22A3O75751 556 aa13.73□□□□□ -0.21
CPSF1-211ENST00000533492 KRT75O95678 551 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms