RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 KIR2DL3P43628 341 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 CPA2P48052 419 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 CARD18P57730 90 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 SESN3P58005 492 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 PLAURQ03405 335 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 MYBPHQ13203 477 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 SELENBP1Q13228 472 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 PAGE3Q5JUK9 113 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 LRIF1Q5T3J3 769 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 VWA1Q6PCB0 445 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 KIF18BQ86Y91 864 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 CMIPQ8IY22 773 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 ATP6V1C2Q8NEY4 427 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 SLC38A5Q8WUX1 472 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 WDR60Q8WVS4 1066 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 TMEM234Q8WY98 164 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 OSTF1Q92882 214 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 STARD4Q96DR4 205 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 RBM24Q9BX46 236 aaKnown RBP13.78□□□□□ -0.2
CPSF1-210ENST00000532935 RAD21L1Q9H4I0 556 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 ZNF385DQ9H6B1 395 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 MCCC2Q9HCC0 563 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 EXOSC3Q9NQT5 275 aaKnown RBP13.78□□□□□ -0.2
CPSF1-210ENST00000532935 ACER3Q9NUN7 267 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 THUMPD1Q9NXG2 353 aaKnown RBP13.78□□□□□ -0.2
CPSF1-210ENST00000532935 SLC25A37Q9NYZ2 338 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 CALML5Q9NZT1 146 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 TRIM33Q9UPN9 1127 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 AKAP9Q99996 3911 aa13.78□□□□□ -0.2
CPSF1-210ENST00000532935 A8MXE2 369 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 MSTNO14793 375 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 SMNDC1O75940 238 aaKnown RBP eCLIP13.77□□□□□ -0.21
CPSF1-210ENST00000532935 SYNGR4O95473 234 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 DBIP07108 87 aaKnown RBP13.77□□□□□ -0.21
CPSF1-210ENST00000532935 CD1EP15812 388 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 IL7RP16871 459 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 RYKP34925 604 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 CRISP3P54108 245 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 SIRPAP78324 504 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 FADDQ13158 208 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 GNA13Q14344 377 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 GUSBP1Q15486 140 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 RGNQ15493 299 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 TMEM176BQ3YBM2 270 aaPredicted RBP13.77□□□□□ -0.21
CPSF1-210ENST00000532935 BTLAQ7Z6A9 289 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 MSRB3Q8IXL7 192 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 PEX5LQ8IYB4 626 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 CNOT9Q92600 299 aaKnown RBP13.77□□□□□ -0.21
CPSF1-210ENST00000532935 LURAP1Q96LR2 239 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 TIGARQ9NQ88 270 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 GALNT8Q9NY28 637 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 DSPPQ9NZW4 1301 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 SLAMF8Q9P0V8 285 aa13.77□□□□□ -0.21
CPSF1-210ENST00000532935 A0A1W2PP18 115 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 TMEM247A6NEH6 219 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 FAM107AO95990 144 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 BMP2P12643 396 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 NID1P14543 1247 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 KRTAP10-9P60411 292 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 SORDQ00796 357 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 MERTKQ12866 999 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 C3orf33Q6P1S2 294 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 PLEKHM3Q6ZWE6 761 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 FAM214BQ7L5A3 538 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 ZZZ3Q8IYH5 903 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 ZNF563Q8TA94 476 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 TMEM19Q96HH6 336 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 ZNF317Q96PQ6 595 aaPredicted RBP13.76□□□□□ -0.21
CPSF1-210ENST00000532935 SRXN1Q9BYN0 137 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 NSRP1Q9H0G5 558 aaKnown RBP13.76□□□□□ -0.21
CPSF1-210ENST00000532935 COQ10BQ9H8M1 238 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 DNAJB12Q9NXW2 375 aaKnown RBP13.76□□□□□ -0.21
CPSF1-210ENST00000532935 CRIM1Q9NZV1 1036 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 VAPAQ9P0L0 249 aa13.76□□□□□ -0.21
CPSF1-210ENST00000532935 TRBV5-3A0A0A0MS03 114 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 A0A0G2JPF8 293 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 HNRNPCL2B2RXH8 293 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 HNRNPCL3B7ZW38 293 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 HNRNPCL1O60812 293 aaKnown RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 ADAM11O75078 769 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 SS18L1O75177 396 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 PLGP00747 810 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 CGAP01215 116 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 NUDT7P0C024 238 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 HNRNPCL4P0DMR1 293 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 TROVE2P10155 538 aaKnown RBP eCLIP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 PPIBP23284 216 aaKnown RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 SLC7A1P30825 629 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 CPOXP36551 454 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 ZNF239Q16600 458 aaKnown RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 LIN52Q52LA3 116 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 RPS26P11Q5JNZ5 115 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 MRPL2Q5T653 305 aaKnown RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 METTL21CQ5VZV1 264 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 OR52P1PQ8NH57 321 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 BCAS4Q8TDM0 211 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 FAM222BQ8WU58 562 aa13.75□□□□□ -0.21
CPSF1-210ENST00000532935 CPNE4Q96A23 557 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 GMPPAQ96IJ6 420 aaPredicted RBP13.75□□□□□ -0.21
CPSF1-210ENST00000532935 CCDC106Q9BWC9 280 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms