RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 C21orf58P58505 322 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 CSNK2A1P68400 391 aaPredicted RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 HPCAP84074 193 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 TAB1Q15750 504 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 CHI3L2Q15782 390 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ARHGAP11BQ3KRB8 267 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 KRT71Q3SY84 523 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 SLC25A53Q5H9E4 307 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 CLEC4FQ8N1N0 589 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ZNF563Q8TA94 476 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 RAB3IL1Q8TBN0 382 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 XAGE5Q8WWM1 108 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ZNF775Q96BV0 537 aaPredicted RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 ZHX1-C8orf76Q96EF9 292 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 PKNOX2Q96KN3 472 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 QRSL1Q9H0R6 528 aaKnown RBP13.09□□□□□ -0.31
VPS28-215ENST00000531924 OR51I1Q9H343 314 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 COQ10BQ9H8M1 238 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 AKTIPQ9H8T0 292 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 BCO1Q9HAY6 547 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ASIC5Q9NY37 505 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 EMC3Q9P0I2 261 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 ARID1AO14497 2285 aa13.09□□□□□ -0.31
VPS28-215ENST00000531924 PRSS51A0A1B0GVH4 220 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 A0A1W2PP18 115 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 SULT2B1O00204 365 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 TYROBPO43914 113 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 FCMRO60667 390 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 PAX1P15863 534 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 OR3A2P47893 321 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 CASP9P55211 416 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 SESN3P58005 492 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 ABCE1P61221 599 aaKnown RBP13.08□□□□□ -0.32
VPS28-215ENST00000531924 SKP2Q13309 424 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 VEZF1Q14119 521 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 ZNF141Q15928 474 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 NCMAPQ5T1S8 102 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 Q6ZT83 130 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 GALNT5Q7Z7M9 940 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 ANKRD46Q86W74 232 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 KIRREL3Q8IZU9 778 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 UBE2J2Q8N2K1 259 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 ZNF781Q8N8C0 355 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 AENQ8WTP8 325 aaKnown RBP13.08□□□□□ -0.32
VPS28-215ENST00000531924 SMAP2Q8WU79 429 aaPredicted RBP13.08□□□□□ -0.32
VPS28-215ENST00000531924 SLC25A43Q8WUT9 341 aaPredicted RBP13.08□□□□□ -0.32
VPS28-215ENST00000531924 CENPHQ9H3R5 247 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 SLC35A3Q9Y2D2 325 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 WDR45Q9Y484 360 aa13.08□□□□□ -0.32
VPS28-215ENST00000531924 ANKRD28O15084 1053 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 BIRC5O15392 142 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ITM2AO43736 263 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 CYTIPO60759 359 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 UGT2B17O75795 530 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 LYZL6O75951 148 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 SNUPNO95149 360 aaKnown RBP13.07□□□□□ -0.32
VPS28-215ENST00000531924 OR12D1P0DN82 309 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 NID1P14543 1247 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 UQCRC2P22695 453 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 RYKP34925 604 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 DIO1P49895 249 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 KHKP50053 298 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 RPL14P50914 215 aaKnown RBP13.07□□□□□ -0.32
VPS28-215ENST00000531924 PPA1Q15181 289 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ETFDHQ16134 617 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 GPAT3Q53EU6 434 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ADAM5Q6NVV9 412 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 TNFAIP8L2Q6P589 184 aaPredicted RBP13.07□□□□□ -0.32
VPS28-215ENST00000531924 TMPPEQ6ZT21 453 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 SSX8Q7RTT4 187 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 OR8J2Q8NGG1 315 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 RAB8BQ92930 207 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 PSD2Q9BQI7 771 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ZNF350Q9GZX5 532 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 SERHL2Q9H4I8 314 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ALG2Q9H553 416 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 POLE3Q9NRF9 147 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 ACER3Q9NUN7 267 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 PRSS50Q9UI38 385 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.07□□□□□ -0.32
VPS28-215ENST00000531924 RAP2CQ9Y3L5 183 aa13.07□□□□□ -0.32
VPS28-215ENST00000531924 NSD1Q96L73 2696 aaPredicted RBP13.07□□□□□ -0.32
VPS28-215ENST00000531924 ZNF724A8MTY0 619 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ZNF814B7Z6K7 855 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ETV2O00321 342 aaPredicted RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 SMAD9O15198 467 aaKnown RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 H6PDO95479 791 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 GGT1P19440 569 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 S100A3P33764 101 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 IDUAP35475 653 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 APOBEC1P41238 236 aaKnown RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 ETV4P43268 484 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 SLC1A6P48664 564 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 ANXA11P50995 505 aaKnown RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 CLNS1AP54105 237 aaKnown RBP13.06□□□□□ -0.32
VPS28-215ENST00000531924 BSPH1Q075Z2 132 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 FAPQ12884 760 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 CLEC12BQ2HXU8 276 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 SYT14P1Q58G82 188 aa13.06□□□□□ -0.32
VPS28-215ENST00000531924 OLIG3Q7RTU3 272 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms