RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 TIMP3P35625 211 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 RNF144AP50876 292 aaPredicted RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 P2RX1P51575 399 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 CCR4P51679 360 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ZNF136P52737 540 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 CDK6Q00534 326 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ZNF117Q03924 483 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 RBBP4Q09028 425 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SCARB2Q14108 478 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SELPLGQ14242 412 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 LARS2Q15031 903 aaKnown RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 SF3B4Q15427 424 aaKnown RBP eCLIP9.15□□□□□ -0.946e-8■■■■■ 27
VPS28-204ENST00000526054 MAPK11Q15759 364 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ZSWIM7Q19AV6 140 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 KRTAP21-3Q3LHN1 58 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 GLYR1Q49A26 553 aaPredicted RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 LIN52Q52LA3 116 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 NHSL2Q5HYW2 709 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 RPS26P11Q5JNZ5 115 aaPredicted RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 RAET1LQ5VY80 246 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 NSUN5P2Q63ZY6 315 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 NANOGP8Q6NSW7 305 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 REEP3Q6NUK4 255 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 AAGABQ6PD74 315 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 HACD2Q6Y1H2 254 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SERPINA11Q86U17 422 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 CDC20BQ86Y33 519 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 KRT73Q86Y46 540 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SLC30A8Q8IWU4 369 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 C11orf65Q8NCR3 313 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 HIPK4Q8NE63 616 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 OR52P1PQ8NH57 321 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 NFKBIDQ8NI38 313 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 MAL2Q969L2 176 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 DOCK7Q96N67 2140 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ALPK1Q96QP1 1244 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 TRIB1Q96RU8 372 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ECSITQ9BQ95 431 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SLC39A3Q9BRY0 314 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SPATA5L1Q9BVQ7 753 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 LAT2Q9GZY6 243 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 QRSL1Q9H0R6 528 aaKnown RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 ARMC7Q9H6L4 198 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 KAT8Q9H7Z6 458 aaKnown RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 NANOGQ9H9S0 305 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 ZNF629Q9UEG4 869 aaPredicted RBP9.15□□□□□ -0.94
VPS28-204ENST00000526054 KCNE5Q9UJ90 142 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 CARD8Q9Y2G2 431 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 AP3M1Q9Y2T2 418 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 SLC6A5Q9Y345 797 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 VPS13CQ709C8 3753 aa9.15□□□□□ -0.94
VPS28-204ENST00000526054 MED12Q93074 2177 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 HRNRQ86YZ3 2850 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 CENPVL1A0A0U1RR11 272 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 TUBAL3A6NHL2 446 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 CCT8L1PA6NM43 557 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 B4DXG7 233 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 LINC01387J3KSC0 135 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 CYP7B1O75881 506 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 PGM3O95394 542 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 THBS1P07996 1170 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 UBTFL6P0CB48 400 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 NID1P14543 1247 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ETS2P15036 469 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ZNF17P17021 662 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 BMP7P18075 431 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 TCEA1P23193 301 aaKnown RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 PGM1P36871 562 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 SLC6A8P48029 635 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 NUDT2P50583 147 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 KCNJ10P78508 379 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 SKP2Q13309 424 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 CBFBQ13951 182 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 MAPK14Q16539 360 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ZSCAN26Q16670 478 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 NDUFAF6Q330K2 333 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 RABL3Q5HYI8 236 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 DCST1Q5T197 706 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 FAM91A1Q658Y4 838 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 VASNQ6EMK4 673 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ERICH5Q6P6B1 374 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ENPP6Q6UWR7 440 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 PAMR1Q6UXH9 720 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 TRPM8Q7Z2W7 1104 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 NET1Q7Z628 596 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 HMGN2P46Q86SG4 172 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 KIF18BQ86Y91 864 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 C10orf111Q8N326 155 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 OR5W2Q8NH69 310 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 OR10A6Q8NH74 314 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ABTB1Q969K4 478 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 ZBTB8AQ96BR9 441 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ARSGQ96EG1 525 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 ZNF607Q96SK3 696 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 HOPXQ9BPY8 73 aaPredicted RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 PIGQQ9BRB3 760 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 UGT2B28Q9BY64 529 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 EXOSC3Q9NQT5 275 aaKnown RBP9.14□□□□□ -0.95
VPS28-204ENST00000526054 MED17Q9NVC6 651 aa9.14□□□□□ -0.95
VPS28-204ENST00000526054 TAGLN3Q9UI15 199 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms