RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 AMER3Q8N944 861 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 TTLQ8NG68 377 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 OR1J2Q8NGS2 313 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 NT5CQ8TCD5 201 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 UBTD2Q8WUN7 234 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 MOCOSQ96EN8 888 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 FER1L6-AS2Q96M78 137 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 MRPL57Q9BQC6 102 aaKnown RBP6.32□□□□□ -1.4
SDCBP-208ENST00000520228 EFCAB11Q9BUY7 163 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 NT5DC2Q9H857 520 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 DDX31Q9H8H2 851 aaKnown RBP6.32□□□□□ -1.4
SDCBP-208ENST00000520228 C14orf105Q9NVL8 296 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 P4HTMQ9NXG6 502 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 CPSF2Q9P2I0 782 aaKnown RBP6.32□□□□□ -1.4
SDCBP-208ENST00000520228 TBK1Q9UHD2 729 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 C3orf18Q9UK00 162 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 TMCO1Q9UM00 188 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 NAALAD2Q9Y3Q0 740 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 V9GYY5 206 aaPredicted RBP6.32□□□□□ -1.4
SDCBP-208ENST00000520228 SPTA1P02549 2419 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 SDK2Q58EX2 2172 aa6.32□□□□□ -1.4
SDCBP-208ENST00000520228 PIKFYVEQ9Y2I7 2098 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 MAGEA13PA6NCF6 341 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ANKDD1BA6NHY2 528 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 A6NL46 340 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SMIM23A6NLE4 172 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 IDSB3KWA1 339 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 FAM90A26D6RGX4 464 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HS6ST1O60243 411 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 GALR3O60755 368 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SMIM24O75264 130 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 RDH16O75452 317 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HIST1H2ABP04908 130 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HEXBP07686 556 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 EPORP19235 508 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ANXA7P20073 488 aaKnown RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HPDP32754 393 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HSD17B3P37058 310 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SLCO1A2P46721 670 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 RAB8AP61006 207 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 STXBP1P61764 594 aaKnown RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SKP1P63208 163 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 CHAF1BQ13112 559 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SNTA1Q13424 505 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 RBBP7Q16576 425 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SYT16Q17RD7 645 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 DEFB134Q4QY38 66 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 TECRLQ5HYJ1 363 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 TOR1AIP1Q5JTV8 583 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 NSUN5P2Q63ZY6 315 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 C18orf63Q68DL7 685 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 NIPAL1Q6NVV3 410 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 HIST3H2AQ7L7L0 130 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 LCA5Q86VQ0 697 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 C1orf87Q8N0U7 546 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 CLEC1AQ8NC01 280 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 OR51Q1Q8NH59 317 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 OR5R1Q8NH85 324 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 C9orf43Q8TAL5 461 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ACMSDQ8TDX5 336 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 DUSP19Q8WTR2 217 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ABTB1Q969K4 478 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 UBE2E3Q969T4 207 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 WDR34Q96EX3 536 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 SRSF8Q9BRL6 282 aaKnown RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ACTR8Q9H981 624 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF71Q9NQZ8 489 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 FBXL4Q9UKA2 621 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF490Q9ULM2 529 aaPredicted RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 TLN1Q9Y490 2541 aaKnown RBP6.31□□□□□ -1.4
SDCBP-208ENST00000520228 LOC400499M0QZD8 3231 aa6.31□□□□□ -1.4
SDCBP-208ENST00000520228 A0A1W2PPM1 405 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 LRIT2A6NDA9 550 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 ZNF860A6NHJ4 632 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GOLGA8RI6L899 631 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 OGG1O15527 345 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 CHST10O43529 356 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 SIX3O95343 332 aaPredicted RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 BMP10O95393 424 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GSTA1P08263 222 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 CD22P20273 847 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 TAC1P20366 129 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 IL10P22301 178 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 EEF1DP29692 281 aaKnown RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 SERPINB1P30740 379 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 XCR1P46094 333 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GPR143P51810 404 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 CLDN20P56880 219 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 BTN3A2P78410 334 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 SPOCK1Q08629 439 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 IFFO1Q0D2I5 559 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 MAD2L1Q13257 205 aaPredicted RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GTF2H2Q13888 395 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 RASA2Q15283 850 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 LACTB2Q53H82 288 aaPredicted RBP6.3□□□□□ -1.4
SDCBP-208ENST00000520228 DCAF10Q5QP82 559 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 MFSD4BQ5TF39 518 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 TMEM198Q66K66 360 aa6.3□□□□□ -1.4
SDCBP-208ENST00000520228 GTF2H2CQ6P1K8 395 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms