RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 YARS2Q9Y2Z4 477 aaKnown RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SLC9B1P1A6NJY1 282 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 ERVH48-1M5A8F1 160 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 CEBPGP53567 150 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 PIN1Q13526 163 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 CCINQ13939 588 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 FAM69BQ5VUD6 431 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 NLRC3Q7RTR2 1065 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 P4HA3Q7Z4N8 544 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 GLCCI1Q86VQ1 547 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 PDLIM5Q96HC4 596 aaKnown RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 TRAF4Q9BUZ4 470 aaPredicted RBP12.3□□□□□ -0.44
TCOF1-213ENST00000514442 GABARAPL3Q9BY60 117 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 RGCCQ9H4X1 137 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 GPR52Q9Y2T5 361 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 OIP5O43482 229 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 KANSL1Q7Z3B3 1105 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 ANKK1Q8NFD2 765 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 OR4K5Q8NGD3 323 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 SERINC2Q96SA4 455 aa12.3□□□□□ -0.44
TCOF1-213ENST00000514442 URB1O60287 2271 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 LOC100509620A0A075B734 347 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 A0A1W2PPK0 400 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 PRH1P02810 166 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 SPARCP09486 303 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TACR1P25103 407 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 SOX2P48431 317 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TNK1Q13470 666 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 SCGB2B2Q4G0G5 96 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 ARMC10Q8N2F6 343 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 BOLLQ8N9W6 283 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 OR10K1Q8NGX5 313 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CPNE2Q96FN4 548 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CMKLR1Q99788 373 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CRB3Q9BUF7 120 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 LDAHQ9H6V9 325 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 A0A1B0GVC2 190 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CIB4A0PJX0 185 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 LINC00862A6NCI5 91 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 A6NIN4 97 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TTLL8A6PVC2 850 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 GABRPO00591 440 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 S100A11P31949 105 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CAPZA1P52907 286 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 DLX5P56178 289 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 HOXC5Q00444 222 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 MAP4K2Q12851 820 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 MRPL58Q14197 206 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 NRMQ8IXM6 262 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 FBXW5Q969U6 566 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 STRADBQ9C0K7 418 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF576Q9H609 170 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 SRA1Q9HD15 236 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TM7SF3Q9NS93 570 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 BTNL2Q9UIR0 455 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 A0A0J9YY10 115 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 RNASET2O00584 256 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 IMPA1P29218 277 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 RPL34P49207 117 aaKnown RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 PRR22Q8IZ63 422 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 HMGCLL1Q8TB92 370 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 PPP4R1LQ9P1A2 415 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 DSCR3O14972 297 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 ACSM4P0C7M7 580 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CD79BP40259 229 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CCNJQ5T5M9 372 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CARD17Q5XLA6 110 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 PARM1Q6UWI2 310 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM207Q6UWW9 146 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 HIST1H2AAQ96QV6 131 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 ORAI3Q9BRQ5 295 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 NOX3Q9HBY0 568 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 CPNE7Q9UBL6 633 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 TMEFF2Q9UIK5 374 aaPredicted RBP12.29□□□□□ -0.44
TCOF1-213ENST00000514442 RASD1Q9Y272 281 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 MEMO1Q9Y316 297 aa12.29□□□□□ -0.44
TCOF1-213ENST00000514442 HMGN2P05204 90 aaKnown RBP12.28□□□□□ -0.44
TCOF1-213ENST00000514442 CCNOP22674 350 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 RPE65Q16518 533 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 TMEM225Q6GV28 225 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 MSLNLQ96KJ4 702 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 SLC38A1Q9H2H9 487 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 TBX21Q9UL17 535 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 ATXN7L1Q9ULK2 861 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-213ENST00000514442 DOCK1Q14185 1865 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 SULT1C2O00338 296 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 RBMXL2O75526 392 aaKnown RBP12.28□□□□□ -0.44
TCOF1-213ENST00000514442 IFNA17P01571 189 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 PIPP12273 146 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-213ENST00000514442 GTF2F2P13984 249 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 EPHA5P54756 1037 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 RASGEF1BQ0VAM2 473 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 NFATC4Q14934 902 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 ZNF425Q6IV72 752 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 SBSNQ6UWP8 590 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 TMEFF1Q8IYR6 380 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 ACBD7Q8N6N7 88 aa12.28□□□□□ -0.44
TCOF1-213ENST00000514442 TP53I13Q8NBR0 393 aaPredicted RBP12.28□□□□□ -0.44
TCOF1-213ENST00000514442 CD300LFQ8TDQ1 290 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms