RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 PTAFRP25105 342 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 CHRNEQ04844 493 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 CKAP4Q07065 602 aaKnown RBP12.93□□□□□ -0.34
TRAF4-212ENST00000498540 QPRTQ15274 297 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 DCST2Q5T1A1 773 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 C3orf33Q6P1S2 294 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 GALNT5Q7Z7M9 940 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 TMCO5AQ8N6Q1 288 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 ZNF614Q8N883 585 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 PROX1Q92786 737 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 QRSL1Q9H0R6 528 aaKnown RBP12.93□□□□□ -0.34
TRAF4-212ENST00000498540 CHODLQ9H9P2 273 aa12.93□□□□□ -0.34
TRAF4-212ENST00000498540 HEATR1Q9H583 2144 aaKnown RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 NPIPB9F8W1W9 429 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 H3BQF6 201 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 M0R1B8 84 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 GTPBP1O00178 669 aaKnown RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 ETV2O00321 342 aaPredicted RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 SLC28A1O00337 649 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 DIO1P49895 249 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 CCR4P51679 360 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 ATP12AP54707 1039 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 RPL38P63173 70 aaKnown RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 LSM11P83369 360 aaKnown RBP eCLIP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 TIGD2Q4W5G0 525 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 RFTN2Q52LD8 501 aaPredicted RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 FAM120AOSQ5T036 256 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 ARFGEF3Q5TH69 2177 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 FBXW9Q5XUX1 488 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 ABLIM2Q6H8Q1 611 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 KLHL17Q6TDP4 642 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 UBE2J2Q8N2K1 259 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 NOA1Q8NC60 698 aaKnown RBP12.92□□□□□ -0.34
TRAF4-212ENST00000498540 OR5W2Q8NH69 310 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 ACMSDQ8TDX5 336 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 MZB1Q8WU39 189 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 CCDC126Q96EE4 140 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 HOXD1Q9GZZ0 328 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 DTNAQ9Y4J8 743 aa12.92□□□□□ -0.34
TRAF4-212ENST00000498540 CIB4A0PJX0 185 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 CCT8L1PA6NM43 557 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 ZNF264O43296 627 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 PROCP04070 461 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 ABHD2P08910 425 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 CSF3P09919 207 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 UBL4AP11441 157 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 NTF4P34130 210 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 EFNA4P52798 201 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 FOXG1P55316 489 aaPredicted RBP12.91□□□□□ -0.34
TRAF4-212ENST00000498540 TP53BP2Q13625 1128 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 CBFBQ13951 182 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 MLC1Q15049 377 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 CFAP157Q5JU67 520 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 ZNF544Q6NX49 715 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 TOR1AIP2Q8NFQ8 470 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 INPP5KQ9BT40 448 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 C1QTNF6Q9BXI9 259 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 ACTRT3Q9BYD9 372 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 TUBB1Q9H4B7 451 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 GPATCH2Q9NW75 528 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 KCNS2Q9ULS6 477 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 FIS1Q9Y3D6 152 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 TRAF6Q9Y4K3 522 aa12.91□□□□□ -0.34
TRAF4-212ENST00000498540 NUP214P35658 2090 aaPredicted RBP12.91□□□□□ -0.34
TRAF4-212ENST00000498540 IGKV3D-15A0A087WSY6 115 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 ZNF716A6NP11 495 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 VWC2LB2RUY7 222 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 LSM1O15116 133 aaKnown RBP12.9□□□□□ -0.34
TRAF4-212ENST00000498540 EIF4E2O60573 245 aaKnown RBP12.9□□□□□ -0.34
TRAF4-212ENST00000498540 LINC00032P0C843 101 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 GZMKP49863 264 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 DNAJB13P59910 316 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 NAA20P61599 178 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 SKP2Q13309 424 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 GGTLC2Q14390 218 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 GALNTL6Q49A17 601 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 PDZK1Q5T2W1 519 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 FAM166AQ6J272 317 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 TMPPEQ6ZT21 453 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 OR7A2PQ8NGA2 310 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 ADAMTS15Q8TE58 950 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 APH1AQ96BI3 265 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 MSI2Q96DH6 328 aaKnown RBP12.9□□□□□ -0.34
TRAF4-212ENST00000498540 MTERF3Q96E29 417 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 PRR14Q9BWN1 585 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 EML4Q9HC35 981 aaKnown RBP12.9□□□□□ -0.34
TRAF4-212ENST00000498540 EMC3Q9P0I2 261 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 TBK1Q9UHD2 729 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 DCDC2Q9UHG0 476 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 NOSIPQ9Y314 301 aaKnown RBP12.9□□□□□ -0.34
TRAF4-212ENST00000498540 ATP23Q9Y6H3 246 aa12.9□□□□□ -0.34
TRAF4-212ENST00000498540 CENPVL1A0A0U1RR11 272 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 LOC100289279A0A1B0GTE1 492 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 A0A1W2PPM1 405 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SULT2B1O00204 365 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 SCAMP2O15127 329 aaKnown RBP12.89□□□□□ -0.35
TRAF4-212ENST00000498540 GLRA3O75311 464 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 ITGA5P08648 1049 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 LAMP1P11279 417 aa12.89□□□□□ -0.35
TRAF4-212ENST00000498540 NEFHP12036 1026 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms