RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 PLEKHF1Q96S99 279 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 MCHR1Q99705 422 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 NAT10Q9H0A0 1025 aaKnown RBP2.3□□□□□ -2.04
VPS50-219ENST00000495039 OR51J1Q9H342 316 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 ZNF385DQ9H6B1 395 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 NARFLQ9H6Q4 476 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 HPF1Q9NWY4 346 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 B3GNT2Q9NY97 397 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 NAP1L2Q9ULW6 460 aaPredicted RBP2.3□□□□□ -2.04
VPS50-219ENST00000495039 ALG6Q9Y672 507 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 MAD1L1Q9Y6D9 718 aa2.3□□□□□ -2.04
VPS50-219ENST00000495039 THSD7BQ9C0I4 1608 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 SF3B1O75533 1304 aaKnown RBP eCLIP2.29□□□□□ -2.04
VPS50-219ENST00000495039 FRMPD4Q14CM0 1322 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 IGHV2-70DA0A0C4DH43 119 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 A0A0J9YXY3 114 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 SPRR5A0A1B0GTR4 108 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 BICDL2A1A5D9 508 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TRIM49D1C9J1S8 452 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 E7ESA3 106 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 MSH4O15457 936 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TPSB2P20231 275 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TBXA2RP21731 343 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 ADSSP30520 456 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 ACADVLP49748 655 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 CAV2P51636 162 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 CHRNB3Q05901 458 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 CCDC173Q0VFZ6 552 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 PJVKQ0ZLH3 352 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 CUL1Q13616 776 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TPSAB1Q15661 275 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TPD52L1Q16890 204 aaPredicted RBP2.29□□□□□ -2.04
VPS50-219ENST00000495039 TATDN3Q17R31 274 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TFDP3Q5H9I0 405 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 RABGAP1LQ5R372 815 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 NCR3LG1Q68D85 454 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 CCDC137Q6PK04 289 aaKnown RBP2.29□□□□□ -2.04
VPS50-219ENST00000495039 SYT10Q6XYQ8 523 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 KIAA1328Q86T90 577 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 ACOT1Q86TX2 421 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 GRAMD2AQ8IUY3 354 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TCTEX1D2Q8WW35 142 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 SPRYD4Q8WW59 207 aaPredicted RBP2.29□□□□□ -2.04
VPS50-219ENST00000495039 C12orf66Q96MD2 445 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 RNF126Q9BV68 326 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 ZDHHC11Q9H8X9 412 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 NANOGQ9H9S0 305 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 GNG12Q9UBI6 72 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 WARS2Q9UGM6 360 aaKnown RBP2.29□□□□□ -2.04
VPS50-219ENST00000495039 LCMT1Q9UIC8 334 aa2.29□□□□□ -2.04
VPS50-219ENST00000495039 TTC21BQ7Z4L5 1316 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 A0A1W2PNV4 684 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 A8MUI8 341 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 K7EPI3 171 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 KIF2AO00139 706 aaPredicted RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 IDH1O75874 414 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 SUPT7LO94864 414 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 UFL1O94874 794 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 SLITRK3O94933 977 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 SNAPINO95295 136 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 GNA14O95837 355 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 CA1P00915 261 aaPredicted RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 H2BFMP0C1H6 154 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 CYP2B6P20813 491 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 NT5EP21589 574 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 CD80P33681 288 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 AP3M2P53677 418 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 POLR2FP61218 127 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 USH1GQ495M9 461 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 UNQ9370/PRO34162Q6UXP9 181 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 FAM220AQ7Z4H9 259 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 TPRA1Q86W33 373 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 VRK2Q86Y07 508 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 KIR3DL3Q8N743 410 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 CCDC71LQ8N9Z2 235 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 DCAF4L2Q8NA75 395 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 OR10A7Q8NGE5 316 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 OR51G2Q8NGK0 314 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 PAQR8Q8TEZ7 354 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 C7orf33Q8WU49 177 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 DNAJA4Q8WW22 397 aaPredicted RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 OR1E3Q8WZA6 343 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 DCUN1D4Q92564 292 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 RPL3LQ92901 407 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 TPPP3Q9BW30 176 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 POLR2J2Q9GZM3 115 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 MAGT1Q9H0U3 335 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 POLR2J3Q9H1A7 115 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 NXF5Q9H1B4 397 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 SMYD3Q9H7B4 428 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 LIN28AQ9H9Z2 209 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 APMAPQ9HDC9 416 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 SH2D2AQ9NP31 389 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 FARSBQ9NSD9 589 aaKnown RBP2.28□□□□□ -2.04
VPS50-219ENST00000495039 BTNL2Q9UIR0 455 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 OR10H1Q9Y4A9 318 aa2.28□□□□□ -2.04
VPS50-219ENST00000495039 PLEKHG1Q9ULL1 1385 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 CLSPNQ9HAW4 1339 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 HELTA6NFD8 242 aa2.27□□□□□ -2.05
VPS50-219ENST00000495039 USP27XA6NNY8 438 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms