RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PTPN6P29350 595 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GINS1Q14691 196 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MLF2Q15773 248 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C4orf46Q504U0 113 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FRMPD2BQ6IN97 320 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC30A6Q6NXT4 461 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM81Q6P7N7 255 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR8J1Q8NGP2 316 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C1orf216Q8TAB5 229 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UBTD2Q8WUN7 234 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF578Q96N58 590 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZFYVE21Q9BQ24 234 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SRRQ9GZT4 340 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SAP130Q9H0E3 1048 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLITRK2Q9H156 845 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR10A4Q9H209 315 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NMNAT1Q9HAN9 279 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BRF2Q9HAW0 419 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ICKQ9UPZ9 632 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PCDHGB7Q9Y5F8 929 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 THSD7BQ9C0I4 1608 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DOCK4Q8N1I0 1966 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TRBV4-1A0A0J9YWV2 114 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FAM171A2A8MVW0 826 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF705EA8MWA4 302 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRRN3E7EW58 273 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 F8W036 122 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GPX5O75715 221 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NTN1O95631 604 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HMGN1P05114 100 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CPMP14384 443 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NDUFS1P28331 727 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BLOC1S1P78537 153 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM52BQ4KMG9 183 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR10H4Q8NGA5 316 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR4K5Q8NGD3 323 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR52L1Q8NGH7 329 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HRASLS5Q96KN8 279 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SFXN2Q96NB2 322 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR2M2Q96R28 347 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRRN3Q9H3W5 708 aa10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SPATA6Q9NWH7 488 aaPredicted RBP10.02□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 POLEQ07864 2286 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C17orf113A0A1B0GUU1 675 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 A0A1W2PR48 441 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF670-ZNF695F2Z2N8 137 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DSCR3O14972 297 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UGDHO60701 494 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRR35P0CG20 571 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UGT2B7P16662 529 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GABRG2P18507 467 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BIKQ13323 160 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ALG11Q2TAA5 492 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CORO6Q6QEF8 472 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RAB11FIP2Q7L804 512 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NRROSQ86YC3 692 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM185AQ8NFB2 350 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR2L5Q8NG80 312 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NANPQ8TBE9 248 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PHOSPHO1Q8TCT1 267 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ELSPBP1Q96BH3 223 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 JSRP1Q96MG2 331 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 USB1Q9BQ65 265 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C7orf50Q9BRJ6 194 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NRSN2Q9GZP1 204 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZFHX2Q9C0A1 2572 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BLOC1S5-TXNDC5H3BN57 136 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SMAD9O15198 467 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FCMRO60667 390 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SIX6O95475 246 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ATP5A1P25705 553 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HTR2AP28223 471 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GRPRP30550 384 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CTBP2P56545 445 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GRM7Q14831 915 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PTGES3Q15185 160 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GXYLT1Q4G148 440 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TRMT12Q53H54 448 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KDM4DQ6B0I6 523 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ADAMTSL4Q6UY14 1074 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRRC25Q8N386 305 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KIAA1958Q8N8K9 716 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RCBTB1Q8NDN9 531 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SMPDL3BQ92485 455 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZG16BQ96DA0 208 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SEC22CQ9BRL7 303 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRDM9Q9NQV7 894 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CYB5R1Q9UHQ9 305 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NUBP2Q9Y5Y2 271 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RALGAPA2Q2PPJ7 1873 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRIT2A6NDA9 550 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RNASET2O00584 256 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DEFA6Q01524 100 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR52P1PQ8NH57 321 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PIP5K1AQ99755 562 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM185BQ9H7F4 350 aa10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KRCC1Q9NPI7 259 aaPredicted RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NDRG4Q9ULP0 352 aaKnown RBP10.01□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C2orf92A0A1B0GVN3 265 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C1orf226A1L170 272 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms