RNA–Protein interactions for RNA: ENST00000489053.1

HDAC6-232, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-232ENST00000489053 RABEP2Q9H5N1 569 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 MTHFD2LQ9H903 347 aaPredicted RBP8.18□□□□□ -1.1
HDAC6-232ENST00000489053 KLHL28Q9NXS3 571 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 EMC3Q9P0I2 261 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 KLHL9Q9P2J3 617 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF232Q9UNY5 417 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 TRIM33Q9UPN9 1127 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 NCKAP5O14513 1909 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 MED12Q93074 2177 aa8.18□□□□□ -1.1
HDAC6-232ENST00000489053 SULT2B1O00204 365 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 NR5A2O00482 541 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 SCN2BO60939 215 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 GUSBP08236 651 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 PPP3CBP16298 524 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 FKBP2P26885 142 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 IL12AP29459 219 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 DNAJA1P31689 397 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 APOBEC1P41238 236 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 CDKN2CP42773 168 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 SESN3P58005 492 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 DSTNP60981 165 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 PHC1P78364 1004 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 KCNJ10P78508 379 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 CHRNEQ04844 493 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 FAM27E3Q08E93 113 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 TOMM34Q15785 309 aaPredicted RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF239Q16600 458 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ZSWIM7Q19AV6 140 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 LIN52Q52LA3 116 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 HSP90B2PQ58FF3 399 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 EPGNQ6UW88 154 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 FRRS1Q6ZNA5 592 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 LRRC74BQ6ZQY2 392 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 OLIG3Q7RTU3 272 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 HMGN2P46Q86SG4 172 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF440Q8IYI8 595 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF100Q8IYN0 542 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ANKFN1Q8N957 763 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF610Q8N9Z0 462 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 POC1BQ8TC44 478 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ROBO4Q8WZ75 1007 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 PMM1Q92871 262 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 NINJ1Q92982 152 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 VPS33AQ96AX1 596 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 DDIT4LQ96D03 193 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ARSGQ96EG1 525 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 PIK3IP1Q96FE7 263 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 MAELQ96JY0 434 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 QRSL1Q9H0R6 528 aaKnown RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 VIPAS39Q9H9C1 493 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 TPT1P8Q9HAU6 139 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 SDR39U1Q9NRG7 319 aaPredicted RBP8.17□□□□□ -1.1
HDAC6-232ENST00000489053 KLHL13Q9P2N7 655 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 ST6GALNAC2Q9UJ37 374 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 SLC13A4Q9UKG4 626 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 PLEKHA6Q9Y2H5 1048 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 TESMINQ9Y4I5 508 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 CSMD2Q7Z408 3487 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 AKAP9Q99996 3911 aa8.17□□□□□ -1.1
HDAC6-232ENST00000489053 IGHV3-15A0A0B4J1V0 119 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 A0A1W2PNR3 127 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CFAP73A6NFT4 308 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 RAF1P04049 648 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 BCHEP06276 602 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 YES1P07947 543 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CCNA2P20248 432 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 IL11P20809 199 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 PPIBP23284 216 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CXCR1P25024 350 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 PSMA4P25789 261 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 AGTR1P30556 359 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 MTORP42345 2549 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 IDH2P48735 452 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 PCYT1AP49585 367 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 IDH3AP50213 366 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 POLR2HP52434 150 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 OR2B6P58173 313 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 RAC3P60763 192 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 IRX1P78414 480 aaPredicted RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 RASGEF1BQ0VAM2 473 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CAPRIN1Q14444 709 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 SYPL1Q16563 259 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CTU2Q2VPK5 515 aaKnown RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 SYT14P1Q58G82 188 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 TTMPQ5BVD1 217 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 ANKRD34AQ69YU3 496 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF474Q6S9Z5 364 aaPredicted RBP8.16□□□□□ -1.1
HDAC6-232ENST00000489053 ZNF550Q7Z398 422 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 GRINAQ7Z429 371 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 KRT73Q86Y46 540 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 STEAP2Q8NFT2 490 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 OR9I1Q8NGQ6 314 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 RNF128Q8TEB7 428 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 ABHD3Q8WU67 409 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 NRGNQ92686 78 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 ADGRG7Q96K78 797 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 CCDC28BQ9BUN5 200 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 GP6Q9HCN6 339 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 SLCO1B3Q9NPD5 702 aa8.16□□□□□ -1.1
HDAC6-232ENST00000489053 NGBQ9NPG2 151 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms