RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SPTBN5Q9NRC6 3674 aaKnown RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 PLPP2O43688 288 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 BRINP1O60477 761 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 ADAM11O75078 769 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 CPNE3O75131 537 aaKnown RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 PTP4A3O75365 173 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 F8A1P23610 371 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 THBS2P35442 1172 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SRSF5Q13243 272 aaKnown RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 GPR176Q14439 515 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SLC25A35Q3KQZ1 300 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 EXOSC6Q5RKV6 272 aaKnown RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 ANKRD54Q6NXT1 300 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 VASH1Q7L8A9 365 aaPredicted RBP16.59■□□□□ 0.25
VIM-206ENST00000487938 SSX6Q7RTT6 188 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 TCTE3Q8IZS6 198 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 OR5J2Q8NH18 312 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 NDEL1Q9GZM8 345 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 LYRM4Q9HD34 91 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 MCUBQ9NWR8 336 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 CLEC4AQ9UMR7 237 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 SATB2Q9UPW6 733 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 MAU2Q9Y6X3 613 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 ATG2AQ2TAZ0 1938 aa16.59■□□□□ 0.25
VIM-206ENST00000487938 A0A087WV62 115 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 A6NCN8 305 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 RIIAD1A6NNX1 92 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 INMT-MINDY4F8WBC2 141 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 GNB5O14775 395 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 EGFP01133 1207 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 ARSBP15848 533 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 PBX2P40425 430 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 EMDP50402 254 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 FAPQ12884 760 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 C1QTNF12Q5T7M4 302 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 SFXN4Q6P4A7 337 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 OAFQ86UD1 273 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 LRRC28Q86X40 367 aaPredicted RBP16.58■□□□□ 0.25
VIM-206ENST00000487938 GPR135Q8IZ08 494 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 RFLNBQ8N5W9 214 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 DNAJC5GQ8N7S2 189 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 ELSPBP1Q96BH3 223 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 PEX11GQ96HA9 241 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 STACQ99469 402 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 GABRG3Q99928 467 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 SLA2Q9H6Q3 261 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 KLHL21Q9UJP4 597 aa16.58■□□□□ 0.25
VIM-206ENST00000487938 HCRTR1O43613 425 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 ORC5O43913 435 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 SLC43A1O75387 559 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 NGFRP08138 427 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 PYCR1P32322 319 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 TALDO1P37837 337 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 MYO9BQ13459 2157 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 ZNF761Q86XN6 746 aaPredicted RBP16.58■□□□□ 0.24
VIM-206ENST00000487938 SLC44A3Q8N4M1 653 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 FRMD1Q8N878 549 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 OR4N2Q8NGD1 307 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 UBL7Q96S82 380 aaPredicted RBP16.58■□□□□ 0.24
VIM-206ENST00000487938 ERVMER34-1Q9H9K5 563 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 RPRD1BQ9NQG5 326 aaKnown RBP16.58■□□□□ 0.24
VIM-206ENST00000487938 SLC35A3Q9Y2D2 325 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 SPACA6W5XKT8 324 aa16.58■□□□□ 0.24
VIM-206ENST00000487938 A0A1B0GWA3 101 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 CENPBD1B2RD01 187 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 EEF1E1O43324 174 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 SLC2A5P22732 501 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 SRP9P49458 86 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 SRP54P61011 504 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 PPP1CAP62136 330 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 ACSM3Q53FZ2 586 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 RPL13AP3Q6NVV1 102 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 SYT9Q86SS6 491 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 CA13Q8N1Q1 262 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 OR52R1Q8NGF1 315 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 OR51L1Q8NGJ5 315 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 ABHD1Q96SE0 405 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 NCKAP1Q9Y2A7 1128 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 TMEM5Q9Y2B1 443 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 FANCMQ8IYD8 2048 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 A0A1W2PRG6 482 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 SLC9B1P1A6NJY1 282 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 CTSBP07858 339 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 HOXC4P09017 264 aaPredicted RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 ZNF24P17028 368 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 HK1P19367 917 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 DRD5P21918 477 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 PITPNBP48739 271 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 VSX2P58304 361 aaPredicted RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 RRAS2P62070 204 aaPredicted RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 ALG11Q2TAA5 492 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 FAAH2Q6GMR7 532 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 KIAA1324Q6UXG2 1013 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 TRMT10AQ8TBZ6 339 aaKnown RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 GHSRQ92847 366 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 RFT1Q96AA3 541 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 ANKRD9Q96BM1 317 aaPredicted RBP16.57■□□□□ 0.24
VIM-206ENST00000487938 ZNF559Q9BR84 538 aa16.57■□□□□ 0.24
VIM-206ENST00000487938 RBCK1Q9BYM8 510 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms