RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	ZNF721	Q8TF20	911 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	GRK7	Q8WTQ7	553 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	CCT6B	Q92526	530 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	RNASE6	Q93091	150 aa	Known RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	WDR34	Q96EX3	536 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	CERS2	Q96G23	380 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	RMND5B	Q96G75	393 aa	Predicted RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ADGRG7	Q96K78	797 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	NAP1L3	Q99457	506 aa	Predicted RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	SH3GL2	Q99962	352 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	GPATCH1	Q9BRR8	931 aa	Known RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	OR8D2	Q9GZM6	311 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ROGDI	Q9GZN7	287 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	LIME1	Q9H400	295 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	EHD1	Q9H4M9	534 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	EXO5	Q9H790	373 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	LYRM4	Q9HD34	91 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	SH2D2A	Q9NP31	389 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ACKR4	Q9NPB9	350 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	QPCTL	Q9NXS2	382 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ALKBH4	Q9NXW9	302 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ZNF629	Q9UEG4	869 aa	Predicted RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	IKZF3	Q9UKT9	509 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ZNF490	Q9ULM2	529 aa	Predicted RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	PLEKHA6	Q9Y2H5	1048 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	ATG4B	Q9Y4P1	393 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	OARD1	Q9Y530	152 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	LIPG	Q9Y5X9	500 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	COL6A5	A8TX70	2615 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	EXPH5	Q8NEV8	1989 aa		3.59	□□□□□ -1.83
SNRNP40-205	ENST00000486941	CDC7	O00311	574 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	DNALI1	O14645	258 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	CLGN	O14967	610 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	LMX1B	O60663	402 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SCEL	O95171	688 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ETHE1	O95571	254 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	C1QA	P02745	245 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	RAF1	P04049	648 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	IGKV3-11	P04433	115 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	CCL3	P10147	92 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	COX7A2	P14406	83 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ATP5A1	P25705	553 aa	Known RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	IVD	P26440	423 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SERPINB3	P29508	390 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TIMP3	P35625	211 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PIGA	P37287	484 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ELK3	P41970	407 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	CASP2	P42575	452 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	FNTA	P49354	379 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ASCL1	P50553	236 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PLA2G16	P53816	162 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	KCNJ2	P63252	427 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	IGLV3-21	P80748	117 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ASPH	Q12797	758 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ILF2	Q12905	390 aa	Known RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	DLG1	Q12959	904 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SNTB1	Q13884	538 aa	Known RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PPP1R7	Q15435	360 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TGFBI	Q15582	683 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	HIST2H2AC	Q16777	129 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	DEFB113	Q30KQ7	82 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TMEM35A	Q53FP2	167 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	STEAP4	Q687X5	459 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	HIST2H2AA3	Q6FI13	130 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PAMR1	Q6UXH9	720 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ADAMTSL2	Q86TH1	951 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SERPINA11	Q86U17	422 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ZC3HC1	Q86WB0	502 aa	Known RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	LACC1	Q8IV20	430 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ZDHHC23	Q8IYP9	409 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PDIK1L	Q8N165	341 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	LRRC25	Q8N386	305 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TCAIM	Q8N3R3	496 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ZNF321P	Q8N8H1	164 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ACOT4	Q8N9L9	421 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	RELL2	Q8NC24	303 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	BBOF1	Q8ND07	529 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	NEIL3	Q8TAT5	605 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SLC22A8	Q8TCC7	542 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SLCO2A1	Q92959	643 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	UBE2E3	Q969T4	207 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TMEM18	Q96B42	140 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ANKRD9	Q96BM1	317 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	RHBDF1	Q96CC6	855 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	LRRC39	Q96DD0	335 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SPACA9	Q96E40	222 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	RBM18	Q96H35	190 aa	Known RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	SENP5	Q96HI0	755 aa	Predicted RBP	3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	MS4A14	Q96JA4	679 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	VPS39	Q96JC1	886 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	C18orf12	Q96KH6	178 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	ART5	Q96L15	291 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	FRG2B	Q96QU4	278 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	F2RL3	Q96RI0	385 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	CSF3R	Q99062	836 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	EGFL8	Q99944	293 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	TBCD	Q9BTW9	1192 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	EFCAB11	Q9BUY7	163 aa		3.58	□□□□□ -1.84
SNRNP40-205	ENST00000486941	PLEKHF2	Q9H8W4	249 aa		3.58	□□□□□ -1.84

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms