RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PCDHGB4Q9UN71 923 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 RAP2CQ9Y3L5 183 aa19.16■□□□□ 0.66
USP40-215ENST00000484528 HS3ST1O14792 307 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 AK1P00568 194 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 ADAP00813 363 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 HEXAP06865 529 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 YES1P07947 543 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 OR12D1P0DN82 309 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 SLC1A6P48664 564 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 SESN3P58005 492 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 PHC1P78364 1004 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 MAPK14Q16539 360 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 C3orf33Q6P1S2 294 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 ATG4DQ86TL0 474 aaPredicted RBP19.15■□□□□ 0.66
USP40-215ENST00000484528 OR8J2Q8NGG1 315 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 XAGE5Q8WWM1 108 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 IGFBPL1Q8WX77 278 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 TMEM204Q9BSN7 226 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 NUF2Q9BZD4 464 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 GSX2Q9BZM3 304 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 LAT2Q9GZY6 243 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 OR10A4Q9H209 315 aa19.15■□□□□ 0.66
USP40-215ENST00000484528 ING1Q9UK53 422 aaPredicted RBP19.15■□□□□ 0.66
USP40-215ENST00000484528 HIVEP2P31629 2446 aa19.14■□□□□ 0.66
USP40-215ENST00000484528 SMAD9O15198 467 aaKnown RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 BIRC5O15392 142 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 SCN2BO60939 215 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 BCAS1O75363 584 aaPredicted RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 C1QCP02747 245 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 EDNRAP25101 427 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 RPL14P50914 215 aaKnown RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 RAC3P60763 192 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 FUT5Q11128 374 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 MERTKQ12866 999 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 MPP2Q14168 576 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 CAPRIN1Q14444 709 aaKnown RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 TAB1Q15750 504 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 SPANXN4Q5MJ08 99 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 SFRP5Q5T4F7 317 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 PRSS57Q6UWY2 283 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 SLC43A2Q8N370 569 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 AKAP1Q92667 903 aaKnown RBP eCLIP19.14■□□□□ 0.65
USP40-215ENST00000484528 KISS1RQ969F8 398 aaPredicted RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 DNAJA3Q96EY1 480 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 ZNF300Q96RE9 604 aaPredicted RBP19.14■□□□□ 0.65
USP40-215ENST00000484528 PSD2Q9BQI7 771 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 GP6Q9HCN6 339 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 EXD2Q9NVH0 621 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 KLHL9Q9P2J3 617 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 PRSS50Q9UI38 385 aa19.14■□□□□ 0.65
USP40-215ENST00000484528 PRSS51A0A1B0GVH4 220 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 ZNF814B7Z6K7 855 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 ETV2O00321 342 aaPredicted RBP19.13■□□□□ 0.65
USP40-215ENST00000484528 ANKRD28O15084 1053 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 CLOCKO15516 846 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 KIAA0513O60268 411 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 DHRS4L1P0CG22 281 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 NME5P56597 212 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 RASGEF1BQ0VAM2 473 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 ATAD3BQ5T9A4 648 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 TYW3Q6IPR3 259 aaKnown RBP19.13■□□□□ 0.65
USP40-215ENST00000484528 HEPHL1Q6MZM0 1159 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 EIF3MQ7L2H7 374 aaKnown RBP19.13■□□□□ 0.65
USP40-215ENST00000484528 ZNF611Q8N823 705 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 MIPOL1Q8TD10 442 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 ST8SIA1Q92185 356 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 BDH2Q9BUT1 245 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 PARD6BQ9BYG5 372 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 BCO1Q9HAY6 547 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 KCNK9Q9NPC2 374 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 PNPOQ9NVS9 261 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 WDR45Q9Y484 360 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 PLCE1Q9P212 2302 aa19.13■□□□□ 0.65
USP40-215ENST00000484528 TM9SF1O15321 606 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 FESP07332 822 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 LBPP18428 481 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 PGCP20142 388 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 UQCRC2P22695 453 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 RYKP34925 604 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 CEP85LQ5SZL2 805 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 ANXA8L1Q5VT79 327 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 SAXO2Q658L1 398 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 NEUROG1Q92886 237 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 ROPN1LQ96C74 230 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 PAIP2Q9BPZ3 127 aaKnown RBP19.12■□□□□ 0.65
USP40-215ENST00000484528 HDHD5Q9BXW7 423 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 SSU72Q9NP77 194 aaKnown RBP19.12■□□□□ 0.65
USP40-215ENST00000484528 LAMP3Q9UQV4 416 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.12■□□□□ 0.65
USP40-215ENST00000484528 RNF115Q9Y4L5 304 aa19.12■□□□□ 0.65
USP40-215ENST00000484528 CYTIPO60759 359 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 DNAJA2O60884 412 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 LYZL6O75951 148 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 CNOT4O95628 575 aaKnown RBP19.11■□□□□ 0.65
USP40-215ENST00000484528 TFPIP10646 304 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 CHI3L1P36222 383 aaPredicted RBP19.11■□□□□ 0.65
USP40-215ENST00000484528 PGM1P36871 562 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 OR3A2P47893 321 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 DIO1P49895 249 aa19.11■□□□□ 0.65
USP40-215ENST00000484528 KHKP50053 298 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms