RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SLC6A2P23975 617 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 GZMMP51124 257 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 SRYQ05066 204 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 EPS8Q12929 822 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 SCARB2Q14108 478 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CAPRIN1Q14444 709 aaKnown RBP14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CYP51A1Q16850 503 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 EEF1A1P5Q5VTE0 462 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 NANOGP8Q6NSW7 305 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 C3orf33Q6P1S2 294 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 DHRS4L2Q6PKH6 230 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 PLEKHM3Q6ZWE6 761 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 GRINAQ7Z429 371 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 HMGN2P46Q86SG4 172 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 MTDHQ86UE4 582 aaKnown RBP14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CALHM3Q86XJ0 350 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 VRK2Q86Y07 508 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 KRT73Q86Y46 540 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CCDC71Q8IV32 467 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-208ENST00000484246 UBQLNLQ8IYU4 475 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 C9orf106Q8NAJ2 232 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 NAXEQ8NCW5 288 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 TNIP2Q8NFZ5 429 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 OR2V1Q8NHB1 315 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 CA5BP1Q8WTZ4 195 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 SLC25A43Q8WUT9 341 aaPredicted RBP14.29□□□□□ -0.12
UPF3A-208ENST00000484246 SPATA5L1Q9BVQ7 753 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 FAM107BQ9H098 131 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 ARMC7Q9H6L4 198 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 NANOGQ9H9S0 305 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 GID8Q9NWU2 228 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF232Q9UNY5 417 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 ANGPT4Q9Y264 503 aa14.29□□□□□ -0.12
UPF3A-208ENST00000484246 LOC100653049A0A140TA62 436 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 CFAP73A6NFT4 308 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 SLC22A20A6NK97 555 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 H0YC42 278 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 SEC14L5O43304 696 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 EFNA2O43921 213 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 KRT34O76011 436 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 CRHP06850 196 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 FCGR2AP12318 317 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 UQCRBP14927 111 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 IL11P20809 199 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 FKBP2P26885 142 aaKnown RBP14.28□□□□□ -0.12
UPF3A-208ENST00000484246 PRDX6P30041 224 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 PCGF2P35227 344 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 APOBEC1P41238 236 aaKnown RBP14.28□□□□□ -0.12
UPF3A-208ENST00000484246 HTR3AP46098 478 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 MAP2K6P52564 334 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF136P52737 540 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 TPD52P55327 224 aaPredicted RBP14.28□□□□□ -0.12
UPF3A-208ENST00000484246 TFF3Q07654 80 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 GTF3C1Q12789 2109 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 OR2A2Q6IF42 318 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 POMZP3Q6PJE2 187 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 HACD2Q6Y1H2 254 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 CHMP1BQ7LBR1 199 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 ZNF550Q7Z398 422 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 ARPINQ7Z6K5 226 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 TREML1Q86YW5 311 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 ZZZ3Q8IYH5 903 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 LILRA2Q8N149 483 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 BHLHE22Q8NFJ8 381 aaPredicted RBP14.28□□□□□ -0.12
UPF3A-208ENST00000484246 OR10Q1Q8NGQ4 319 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 SMPDL3BQ92485 455 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 GPATCH1Q9BRR8 931 aaKnown RBP14.28□□□□□ -0.12
UPF3A-208ENST00000484246 SLC39A3Q9BRY0 314 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 SFXN3Q9BWM7 321 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 TRIM8Q9BZR9 551 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 EVA1AQ9H8M9 152 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 RNF122Q9H9V4 155 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 CHST11Q9NPF2 352 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 AP3M1Q9Y2T2 418 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 DOPEY2Q9Y3R5 2298 aa14.28□□□□□ -0.12
UPF3A-208ENST00000484246 A0A0J9YW62 118 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 PRORSD1PA6NEY8 169 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 AP3D1O14617 1153 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 SHOX2O60902 331 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-208ENST00000484246 TGM6O95932 706 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 COX4I1P13073 169 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 CTSSP25774 331 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 HTR1EP28566 365 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 SHC1P29353 583 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 ACAA2P42765 397 aaKnown RBP14.27□□□□□ -0.13
UPF3A-208ENST00000484246 GUSBP1Q15486 140 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 FBXL19-AS1Q494R0 122 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 ZNF311Q5JNZ3 666 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 PDSS1Q5T2R2 415 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 FAM91A1Q658Y4 838 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 C8orf82Q6P1X6 216 aaPredicted RBP14.27□□□□□ -0.13
UPF3A-208ENST00000484246 LIX1LQ8IVB5 337 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 CLIP4Q8N3C7 705 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 ANKS4BQ8N8V4 417 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 OR10D3Q8NH80 312 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 RCN3Q96D15 328 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 REXO5Q96IC2 774 aaKnown RBP14.27□□□□□ -0.13
UPF3A-208ENST00000484246 ZNF607Q96SK3 696 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 PINK1Q9BXM7 581 aa14.27□□□□□ -0.13
UPF3A-208ENST00000484246 RSPO3Q9BXY4 272 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms