RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 PCDH20Q8N6Y1 951 aaKnown RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 NANOGP1Q8N7R0 232 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 CNBD1Q8NA66 436 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 DDHD1Q8NEL9 900 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 NFAM1Q8NET5 270 aaPredicted RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 WDR36Q8NI36 951 aaKnown RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 TMEM174Q8WUU8 243 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 SLC35F5Q8WV83 523 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 HGDQ93099 445 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 PINX1Q96BK5 328 aaKnown RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 C8orf44Q96CB5 159 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 RNF183Q96D59 192 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 LGALS12Q96DT0 336 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 GRAMD2BQ96HH9 432 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 ABHD8Q96I13 439 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 SGK494Q96LW2 274 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 ZNF578Q96N58 590 aaPredicted RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 NDUFAF3Q9BU61 184 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 SPRTNQ9H040 489 aaPredicted RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 GBA3Q9H227 469 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 KLHL31Q9H511 634 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 ESRP2Q9H6T0 727 aaKnown RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 MAGIXQ9H6Y5 334 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 Q9H8V8 135 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 PLEKHA1Q9HB21 404 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 PARVBQ9HBI1 364 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 ASCL3Q9NQ33 180 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 BATF3Q9NR55 127 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 CYSLTR2Q9NS75 346 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 NDE1Q9NXR1 346 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 MIS18AQ9NYP9 233 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 PLEKHB1Q9UF11 243 aaPredicted RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 MIOXQ9UGB7 285 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 NDRG3Q9UGV2 375 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 PRG3Q9Y2Y8 225 aaPredicted RBP3.68□□□□□ -1.82
VPS41-212ENST00000482217 TMED3Q9Y3Q3 217 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 HYOU1Q9Y4L1 999 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 MMACHCQ9Y4U1 282 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 MMP24Q9Y5R2 645 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 AUP1Q9Y679 476 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 V9GYQ6 96 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 AFF2P51816 1311 aa3.68□□□□□ -1.82
VPS41-212ENST00000482217 TRAV24A0A0B4J272 114 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 KBTBD11-OT1A0A1B0GTJ5 212 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TMEM213A2RRL7 107 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 EIF4E1BA6NMX2 242 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 TMEM150CB9EJG8 249 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 H3BMH7 237 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 SLC16A5O15375 505 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 EFNA2O43921 213 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 MAGEC1O60732 1142 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 FCN3O75636 299 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 SCGNO76038 276 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 RGS11O94810 467 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 NOL4O94818 638 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 BAG3O95817 575 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TSPAN13O95857 204 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 VTNP04004 478 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 RNF224P0DH78 156 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 HAPLN1P10915 354 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 GP9P14770 177 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ZNF43P17038 809 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 KITLGP21583 273 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 BCKDHBP21953 392 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 IDSP22304 550 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 DTYMKP23919 212 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 HTR2CP28335 458 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 EIF2S3P41091 472 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 MAP3K8P41279 467 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CRYBB2P43320 205 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 HLCSP50747 726 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 PKNOX1P55347 436 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 RAB4BP61018 213 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 UBE2MP61081 183 aaKnown RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 PSME3P61289 254 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ARF6P62330 175 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 NME3Q13232 169 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ORC2Q13416 577 aaPredicted RBP3.67□□□□□ -1.82
VPS41-212ENST00000482217 VGLL4Q14135 290 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 GRB14Q14449 540 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TWIST1Q15672 202 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ZNF699Q32M78 642 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 COX19Q49B96 90 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 GTDC1Q4AE62 458 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 PTPN20Q4JDL3 420 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 TMEM35AQ53FP2 167 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 MARC1Q5VT66 337 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 IRAK1BP1Q5VVH5 260 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 HIST2H2AA3Q6FI13 130 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 C3orf33Q6P1S2 294 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 PRMT9Q6P2P2 845 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 EMBQ6PCB8 327 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ULK3Q6PHR2 472 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 PARM1Q6UWI2 310 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ZNF621Q6ZSS3 439 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 CRLF3Q8IUI8 442 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 MFSD6LQ8IWD5 586 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 ELMOD1Q8N336 334 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 LMNTD1Q8N9Z9 388 aa3.67□□□□□ -1.82
VPS41-212ENST00000482217 THAP8Q8NA92 274 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms