RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 POLR2DO15514 142 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 CALCAP01258 141 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 DANCRP0C864 163 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 COX6A1P12074 109 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 IL4RP24394 825 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SDC4P31431 198 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 MNDAP41218 407 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 ASCL1P50553 236 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 AIF1P55008 147 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 RPL26P61254 145 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 HERV-K104P61576 105 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 KLC1Q07866 573 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 ZNF415Q09FC8 603 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 ACKR1Q16570 336 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 PTPN20Q4JDL3 420 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 ACER2Q5QJU3 275 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 GARNL3Q5VVW2 1013 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SPINK14Q6IE38 97 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 H3F3CQ6NXT2 135 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 KDELC1Q6UW63 502 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 UNC5DQ6UXZ4 953 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 GALNTL5Q7Z4T8 443 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SLFN11Q7Z7L1 901 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 TMPRSS11BQ86T26 416 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 NUDT13Q86X67 352 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 MEX3DQ86XN8 651 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 ZNF547Q8IVP9 402 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 CDK20Q8IZL9 346 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 TRAM1L1Q8N609 369 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 MSANTD4Q8NCY6 345 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 OR52N5Q8NH56 324 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SSMEM1Q8WWF3 244 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 LCN9Q8WX39 176 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 GLYATL1Q969I3 302 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SLAMF9Q96A28 289 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SLC35C1Q96A29 364 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 NXNL1Q96CM4 212 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SFXN2Q96NB2 322 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 CCL19Q99731 98 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 URM1Q9BTM9 101 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 MCRIP2Q9BUT9 160 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 THAP2Q9H0W7 228 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 SRMSQ9H3Y6 488 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 IMP3Q9NV31 184 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 CPSF2Q9P2I0 782 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 ZNF282Q9UDV7 671 aaPredicted RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 TRIM10Q9UDY6 481 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 C3orf18Q9UK00 162 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 PPIEQ9UNP9 301 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 RPL26L1Q9UNX3 145 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 EIF3LQ9Y262 564 aaKnown RBP3.89□□□□□ -1.79
VPS50-214ENST00000477935 FAM169AQ9Y6X4 670 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 USF3Q68DE3 2245 aa3.89□□□□□ -1.79
VPS50-214ENST00000477935 NME2P1O60361 137 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 POP7O75817 140 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 STATHP02808 62 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SMIM18P0DKX4 95 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 JAK1P23458 1154 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CASP1P29466 404 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 GABRA4P48169 554 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 EMP2P54851 167 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 DCDC1P59894 354 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 MAT1AQ00266 395 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 FKBP3Q00688 224 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 OC90Q02509 493 aaPredicted RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 SLC10A7Q0GE19 358 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 TNK1Q13470 666 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SNTB1Q13884 538 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 SQLEQ14534 574 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 ODF4Q2M2E3 257 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CTU2Q2VPK5 515 aaKnown RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 ZCWPW2Q504Y3 356 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SYT14P1Q58G82 188 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 TCTE1Q5JU00 501 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 RIPPLY2Q5TAB7 128 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 FAAP20Q6NZ36 180 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 PRMT9Q6P2P2 845 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 RGS9BPQ6ZS82 235 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SHISA6Q6ZSJ9 500 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 TRAPPC5Q8IUR0 188 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 LACC1Q8IV20 430 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 KIRREL3Q8IZU9 778 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 RAB42Q8N4Z0 105 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 NIPA2Q8N8Q9 360 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 TMEM35BQ8NCS4 154 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 OR5AP2Q8NGF4 316 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 C8orf44Q96CB5 159 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 ZBED6CLQ96FA7 236 aaPredicted RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 IMMP1LQ96LU5 166 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CFAP57Q96MR6 1250 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 ZNF396Q96N95 335 aaPredicted RBP3.88□□□□□ -1.79
VPS50-214ENST00000477935 DGAT2Q96PD7 388 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 TUBGCP2Q9BSJ2 902 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CCM2Q9BSQ5 444 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CNPY3Q9BT09 278 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SPATA16Q9BXB7 569 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 CLEC7AQ9BXN2 247 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 REG4Q9BYZ8 158 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 SLC39A8Q9C0K1 460 aa3.88□□□□□ -1.79
VPS50-214ENST00000477935 FAM60AQ9NP50 221 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms