RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 ZCCHC3Q9NUD5 404 aaKnown RBP11.09□□□□□ -0.63
SKA3-206ENST00000475251 ASB6Q9NWX5 421 aa11.09□□□□□ -0.63
SKA3-206ENST00000475251 TAS2R16Q9NYV7 291 aa11.09□□□□□ -0.63
SKA3-206ENST00000475251 SLC25A15Q9Y619 301 aa11.09□□□□□ -0.63
SKA3-206ENST00000475251 EXOC1LA0A1B0GW35 172 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 A0A1W2PNR3 127 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 C9JVG2 144 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 NPIPB8E9PQR5 432 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 SLC28A1O00337 649 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 GPR171O14626 319 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 ZNF264O43296 627 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 TCF21O43680 179 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 KIAA0513O60268 411 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 EIF4E2O60573 245 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 APEHP13798 732 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 CASQ1P31415 396 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 APOBEC3AP31941 199 aaPredicted RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 RUNX1T1Q06455 604 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 CKAP4Q07065 602 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 MLC1Q15049 377 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 QPRTQ15274 297 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 EXOSC6Q5RKV6 272 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 UBAP2Q5T6F2 1119 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 ANKRD26P1Q6NSI1 321 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 ZNF572Q7Z3I7 529 aaPredicted RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 R3HCC1LQ7Z5L2 792 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 HOMEZQ8IX15 550 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 ZNF540Q8NDQ6 660 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 SLC25A43Q8WUT9 341 aaPredicted RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 TMEM234Q8WY98 164 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 CDS1Q92903 461 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 ZNF775Q96BV0 537 aaPredicted RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 MTERF3Q96E29 417 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 C16orf58Q96GQ5 468 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 C1orf109Q9NX04 203 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 NOSIPQ9Y314 301 aaKnown RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 DTNAQ9Y4J8 743 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 SPIN1Q9Y657 262 aaPredicted RBP11.08□□□□□ -0.64
SKA3-206ENST00000475251 ATP23Q9Y6H3 246 aa11.08□□□□□ -0.64
SKA3-206ENST00000475251 IGKV3D-15A0A087WSY6 115 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 LOC390937A0A1W2PQ73 354 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 VWC2LB2RUY7 222 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 SULT2B1O00204 365 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ETV2O00321 342 aaPredicted RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 HMGN2P05204 90 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 UROSP10746 265 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 UBL4AP11441 157 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 NEFHP12036 1026 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 NR4A2P43354 598 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ASMTP46597 345 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 DIO1P49895 249 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 CCR4P51679 360 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ATP12AP54707 1039 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 PHC1P78364 1004 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 SPOCK1Q08629 439 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 PDE7AQ13946 482 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 LASP1Q14847 261 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 KIAA0040Q15053 153 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 TOMM34Q15785 309 aaPredicted RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 CFAP157Q5JU67 520 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 DCST2Q5T1A1 773 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 CDC73Q6P1J9 531 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 B3GLCTQ6Y288 498 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 TMPPEQ6ZT21 453 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 IL17RELQ6ZVW7 336 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 MTDHQ86UE4 582 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 C17orf78Q8N4C9 275 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ZNF614Q8N883 585 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 RFWD2Q8NHY2 731 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ACMSDQ8TDX5 336 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ADAMTS15Q8TE58 950 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ST8SIA1Q92185 356 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ZNF75CPQ92670 426 aaPredicted RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 MSI2Q96DH6 328 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 FAM120BQ96EK7 910 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 OTUB1Q96FW1 271 aaPredicted RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 MUS81Q96NY9 551 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 FMO2Q99518 471 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 ACTRT3Q9BYD9 372 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 EML4Q9HC35 981 aaKnown RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 MALT1Q9UDY8 824 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 FAF1Q9UNN5 650 aaPredicted RBP11.07□□□□□ -0.64
SKA3-206ENST00000475251 AMDHD2Q9Y303 409 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 TMED5Q9Y3A6 229 aa11.07□□□□□ -0.64
SKA3-206ENST00000475251 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.06□□□□□ -0.648e-11■■■□□ 18.8
SKA3-206ENST00000475251 SLC35F4A4IF30 521 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 AKAP10O43572 662 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 MRPL33O75394 65 aaKnown RBP11.06□□□□□ -0.64
SKA3-206ENST00000475251 TGFAP01135 160 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 MYL2P10916 166 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 EDNRAP25101 427 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 FKBP2P26885 142 aaKnown RBP11.06□□□□□ -0.64
SKA3-206ENST00000475251 RPL3P39023 403 aaKnown RBP11.06□□□□□ -0.64
SKA3-206ENST00000475251 SNRPD2P62316 118 aaKnown RBP11.06□□□□□ -0.64
SKA3-206ENST00000475251 SRSF2Q01130 221 aaKnown RBP11.06□□□□□ -0.64
SKA3-206ENST00000475251 TGFBR3Q03167 851 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 GABRA6Q16445 453 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 IQCCQ4KMZ1 466 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 TIGD2Q4W5G0 525 aa11.06□□□□□ -0.64
SKA3-206ENST00000475251 ZNF385BQ569K4 471 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms