RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 GCM2O75603 506 aaPredicted RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 UBTFL6P0CB48 400 aaPredicted RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 EDNRAP25101 427 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 SLC18A1P54219 525 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 SESN3P58005 492 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 MAGOHP61326 146 aaKnown RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 MAPK11Q15759 364 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 TFAP2EQ6VUC0 442 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 C16orf62Q7Z3J2 963 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 TUSC5Q8IXB3 177 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 GABRG1Q8N1C3 465 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 TMCO5AQ8N6Q1 288 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 TOR1AIP2Q8NFQ8 470 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 CPNE4Q96A23 557 aaPredicted RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 MAELQ96JY0 434 aaKnown RBP12.56□□□□□ -0.4
UPF3A-204ENST00000475218 SLC35A5Q9BS91 424 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 THAP1Q9NVV9 213 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 ZNF226Q9NYT6 803 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 KLHL13Q9P2N7 655 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 PCDHGB4Q9UN71 923 aa12.56□□□□□ -0.4
UPF3A-204ENST00000475218 SMAD9O15198 467 aaKnown RBP12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CSTAP01040 98 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 S100A3P33764 101 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CCR4P51679 360 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CLNS1AP54105 237 aaKnown RBP12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CHRNEQ04844 493 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 SELENBP1Q13228 472 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CBFBQ13951 182 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 DPY19L1Q2PZI1 675 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 TIGD2Q4W5G0 525 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 SLC9B1Q4ZJI4 515 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 COX20Q5RI15 118 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CROCCP2Q86T23 111 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 KIRREL3Q8IZU9 778 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 ANKFN1Q8N957 763 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 IGFBPL1Q8WX77 278 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 ZNF75CPQ92670 426 aaPredicted RBP12.55□□□□□ -0.4
UPF3A-204ENST00000475218 SLC38A1Q9H2H9 487 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 TMBIM4Q9HC24 238 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 WDR45Q9Y484 360 aa12.55□□□□□ -0.4
UPF3A-204ENST00000475218 CCDC154A6NI56 674 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 CYP7B1O75881 506 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 PGRP06401 933 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 CHRM4P08173 479 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 KITP10721 976 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 PSMB1P20618 241 aaKnown RBP12.54□□□□□ -0.4
UPF3A-204ENST00000475218 MVDP53602 400 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 TSC22D1Q15714 1073 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 SYPL1Q16563 259 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 PDSS1Q5T2R2 415 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 PLEKHM3Q6ZWE6 761 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 FCRLAQ7L513 359 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 SPATA19Q7Z5L4 167 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 RNF130Q86XS8 419 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 PSD2Q9BQI7 771 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 CCDC106Q9BWC9 280 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 GSX1Q9H4S2 264 aaPredicted RBP12.54□□□□□ -0.4
UPF3A-204ENST00000475218 POLE3Q9NRF9 147 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 ACER3Q9NUN7 267 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 EXD2Q9NVH0 621 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 EDARQ9UNE0 448 aa12.54□□□□□ -0.4
UPF3A-204ENST00000475218 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ZNF814B7Z6K7 855 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 DIAPH2O60879 1101 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 PLAUP00749 431 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 GSNP06396 782 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 KHKP50053 298 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 RAC3P60763 192 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 RNPS1Q15287 305 aaKnown RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 SEZ6L2Q6UXD5 910 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 BEND4Q6ZU67 534 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 EIF3MQ7L2H7 374 aaKnown RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ZNF619Q8N2I2 560 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 VPS37AQ8NEZ2 397 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ST8SIA1Q92185 356 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 CNOT9Q92600 299 aaKnown RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 OR52B2Q96RD2 323 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ACTR6Q9GZN1 396 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 BCO1Q9HAY6 547 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 BEX4Q9NWD9 120 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 DSCAMO60469 2012 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 GJE1A6NN92 205 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 AGR2O95994 175 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 RPS4Y1P22090 263 aaKnown RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ACKR1Q16570 336 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ATAD3BQ5T9A4 648 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 C3orf33Q6P1S2 294 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 OR52E6Q96RD3 313 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 PANX1Q96RD7 426 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 ZNF300Q96RE9 604 aaPredicted RBP12.53□□□□□ -0.4
UPF3A-204ENST00000475218 GP6Q9HCN6 339 aa12.53□□□□□ -0.4
UPF3A-204ENST00000475218 AP3D1O14617 1153 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 CYTIPO60759 359 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 PRKD3O94806 890 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 YES1P07947 543 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 CHI3L1P36222 383 aaPredicted RBP12.52□□□□□ -0.41
UPF3A-204ENST00000475218 KCNJ10P78508 379 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 MERTKQ12866 999 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 ATG4DQ86TL0 474 aaPredicted RBP12.52□□□□□ -0.41
UPF3A-204ENST00000475218 RAB3IL1Q8TBN0 382 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms