RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 OR10Q1Q8NGQ4 319 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 OR2V1Q8NHB1 315 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 VANGL1Q8TAA9 524 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM172AQ8WUF8 416 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 DGCR14Q96DF8 476 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 SH3YL1Q96HL8 342 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 IGSF21Q96ID5 467 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CELF6Q96J87 481 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 GUCD1Q96NT3 240 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 MAPKAP1Q9BPZ7 522 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 UTP23Q9BRU9 249 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 DPH7Q9BTV6 452 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 DUSP16Q9BY84 665 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 MIS12Q9H081 205 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ILKAPQ9H0C8 392 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM124BQ9H5Z6 455 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ASB7Q9H672 318 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CDH20Q9HBT6 801 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 XPNPEP1Q9NQW7 623 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 RNF146Q9NTX7 359 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 PSORS1C1Q9UIG5 152 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 NXT1Q9UKK6 140 aaKnown RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF490Q9ULM2 529 aaPredicted RBP4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 DHDHQ9UQ10 334 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 ZNF337Q9Y3M9 751 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 WDR45Q9Y484 360 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 CKAP5Q14008 2032 aa4.32□□□□□ -1.72
CCDC88A-210ENST00000468534 KCNE1BA0A087WTH5 132 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 KBTBD11-OT1A0A1B0GTJ5 212 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 A0A1W2PPK0 400 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CCT8L1PA6NM43 557 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 OR2AT4A6NND4 320 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 E7EWF7 191 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 BET1O15155 118 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 NOS1APO75052 506 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ENTPD5O75356 428 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SH3BGRLO75368 114 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 OR2J3O76001 311 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 NDUFA7O95182 113 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 LCKP06239 509 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 HBQ1P09105 142 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 TFPTP0C1Z6 253 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ATP1B2P14415 290 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CYP11B1P15538 503 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CD36P16671 472 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CHRNB2P17787 502 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 BGNP21810 368 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ME2P23368 584 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 TNFSF8P32971 234 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CYLC1P35663 651 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 OMPP47874 163 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ERFP50548 548 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 DUSP3P51452 185 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 NUDT6P53370 316 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MAPK12P53778 367 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 CCL7P80098 99 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MYL7Q01449 175 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 FCHO2Q0JRZ9 810 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 BNIP2Q12982 314 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 DPYSL3Q14195 570 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MELKQ14680 651 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SMCO1Q147U7 214 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MTF1Q14872 753 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 EMC2Q15006 297 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 KNOP1Q1ED39 458 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 GLYR1Q49A26 553 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 FAM69BQ5VUD6 431 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SLX4IPQ5VYV7 408 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MFSD12Q6NUT3 480 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ADAM5Q6NVV9 412 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 Q6ZSV7 163 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 DHDDSQ86SQ9 333 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SATL1Q86VE3 508 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 RANBP3LQ86VV4 465 aaPredicted RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 KCNMB4Q86W47 210 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PARGQ86W56 976 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SLC35F3Q8IY50 421 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 HS3ST5Q8IZT8 346 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 ZFP82Q8N141 532 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PDIK1LQ8N165 341 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SDR9C7Q8NEX9 313 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 B3GNT7Q8NFL0 401 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 WDR36Q8NI36 951 aaKnown RBP4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MAGEC3Q8TD91 643 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 TCP10LQ8TDR4 215 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 NEK7Q8TDX7 302 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 FCAMRQ8WWV6 532 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 HGDQ93099 445 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MYDGFQ969H8 173 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 TMEM45BQ96B21 275 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 C8orf44Q96CB5 159 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 C10orf35Q96D05 121 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 RAB39BQ96DA2 213 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MTBPQ96DY7 904 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 SGK494Q96LW2 274 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 C10orf90Q96M02 699 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 AMDHD1Q96NU7 426 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 PRAP1Q96NZ9 151 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 TNFRSF13CQ96RJ3 184 aa4.31□□□□□ -1.72
CCDC88A-210ENST00000468534 MCCC1Q96RQ3 725 aaPredicted RBP4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms